SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21054

Length: 217 nt

UniGene Fasta

>sp_v3.0_unigene21054
TGAAAGAGTGCTGCCATCTGCAGACACTCCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAAAGTCTTCACTTGAGCAACTGCACCAGTCTGCAGACACTCCCAGACTCAGAGGGGAACCTGTCGGCCTCCAAAGTCTTCACTTGAGCCACTGCGACAGTTTGCAGACACTCCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAAAGTCTTCACTTG

Ace file of the UniGene sp_v3.0_unigene21054

If you push the Download ace button, you will download an ace file of this UniGene.

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Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	3.0e-11	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002334784.1	predicted protein [Populus trichocarpa]	7.0e-11	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: ERROR#3, very serious frame error, warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 30 aas, your sequence is shorter than subject: 72 - 1071

Fln protein: KECCHLQTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLQSLHLSHCDSLQTLPDSVGNLSGLQSLHL

Protein Length: 73

Fln nts: TGAAAGAGTGCTGCCATCTGCAGACAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCCAAAGTCTTCACTTGAGCCACTGCGACAGTTTGCAGACACTCCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAAAGTCTTCACTTG

Fln Alignment:

Contig21054___xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
C0PQE2_______________xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain