SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20934

Length: 520 nt

UniGene Fasta

>sp_v3.0_unigene20934
CAAGCTTTGCTCGATTAGCCTCTGGTTAAACCAATATCCTCCAGTATAATACCAGCACAGGCAAAAGGCACGGCGGACACGGTTCTACGCGTATACCTTTTGGCACAGAAGGGAAGCCACAGAAAATGGCTTCCATATCTGCCTCTCTGCACATGCAGGCGCGTCCAGACATGGCTCTGCAATCCATTTCTCCATTGAAAGTTCGTTTTTATTCCAAGGCCGCATTATCACTTCCCATTTCCCCATTCAAGGGGGCGACACTCAAGCCTCTGGTGCCCCAGAAGAAACAAAAACTGGAAAATTCAAGATATCTGCAGTAAAAGCATCGCCGGATTATCTAGTTCTTGCTGTGGAATATGGACCAGCTGTACAATTTGTCAAGATAGATACCGATGAAGAGTATGCACTAGCCCAACAACTGCAGATCCGTGGACTTCCCACTATGGTCTTTATCAGTCCAGATTCTCAAAAGCCTGCAATTCGAACTGAAGGCCTTCTTCCTAATGAAACAATCGAAACT

Ace file of the UniGene sp_v3.0_unigene20934

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thioredoxin (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9ST39_PHYPA	-	-	1.0e-13	66%
FL-Next	sp=Thioredoxin-like protein CITRX, chloroplastic; Oryza sativa subsp. japonica (Rice).	-	-	0.0	54%
Sma3	Putative thioredoxin	-	-	3.859e-07	-

Source	Gene names
Sma3	At3g06730; CITRX2; F3E22.13; GSVIVT00030903001; OSTLU_37354; Ot04g02880; PHYPADRAFT_134919; PHYPADRAFT_37148; POPTRDRAFT_1065742;

Source	GOs	Term	Type	Identity
Sma3	nucleoid	GO:0009295	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR006662	-	-
Sma3		IPR012335	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR015467	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G06730.1	TRX P, TRX z Thioredoxin z chr3:2124276-2125845 FORWARD LENGTH=183	1.0e-15	61%
RefSeq	Arabidopsis thaliana	NP_187329.1	thioredoxin-like protein CITRX [Arabidopsis thaliana]	1.0e-15	61%
RefSeq	Populus trichocarpa	XP_002299198.1	predicted protein [Populus trichocarpa]	3.0e-17	64%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q8H2V6

Fln msg: STOP codon was not found. Distance to subject end: 6 aas, atg_distance in limit (1-15): atg_distance = 11, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 157 - 189

Fln protein: YQHRQKARRTRFYAYTFWHRREATENGFHICLSAHAGASRHGSAIHFSIESSFLFQGRIITSHFPIQGGDTQASGAPEETKTGKFKISAVKASPDYLVLAVEYGPAVQFVKIDTDEEYALAQQLQIRGLPTMVFISPDSQKPAIRTEGLLPNETIET

Protein Length: 158

Fln nts: CAAGCTTTGCTCGATTAGCCTCTGGTTAAACCAATATCCTCCAGTATAATACCAGCACAGGCAAAAGGCACGGCGGACACGGTTCTACGCGTATACCTTTTGGCACAGAAGGGAAGCCACAGAAAATGGCTTCCATATCTGCCTCTCTGCACATGCAGGCGCGTCCAGACATGGCTCTGCAATCCATTTCTCCATTGAAAGTTCGTTTTTATTCCAAGGCCGCATTATCACTTCCCATTTCCCCATTCAAGGGGGCGACACTCAAGCCTCTGGTGCCCCAGAAGAAACAAAAACTGGAAAATTCAAGATATCTGCAGTAAAAGCATCGCCGGATTATCTAGTTCTTGCTGTGGAATATGGACCAGCTGTACAATTTGTCAAGATAGATACCGATGAAGAGTATGCACTAGCCCAACAACTGCAGATCCGTGGACTTCCCACTATGGTCTTTATCAGTCCAGATTCTCAAAAGCCTGCAATTCGAACTGAAGGCCTTCTTCCTAATGAAACAATCGAAACT

Fln Alignment:

Contig20934___VKASPDYLVLAVEYGPAVQFVKIDTDEEYALAQQLQIRGLPTMVFISPDSQKPAIRTEGLLPNETI
Q8H2V6_______________VLMAQDIEMLAVEYENNALFVKVDTDDEYELARDMQVRGLPTLYFFSPDQSKDALRTEGLIPIDMI

SNPs (tot: 3)

Position	C %	T %	Probability
306	33	66	0.997452
377	14	85	0.993533
445	16	83	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain