SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20902

Length: 1104 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene20902

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=5 Tax=Pinaceae RepID=Q1L6F3_PINLA	-	-	0.0	93%
FL-Next	tr=CC-NBS-LRR resistance-like protein; Pinus lambertiana (Sugar pine).	-	-	0.0	93%
Sma3	Nbs-lrr resistance protein	-	-	3.445e-08	-

Source	Gene names
Sma3	ADR1; At1g33560; At4g33300; At5g04720; F10C21.19; F17M5.60; GSVIVT00014747001; LOC_Os12g39620; LRR1; MUK11.4; Os12g0586000; OsI_38915; OsJ_36681; POPTRDRAFT_563015; POPTRDRAFT_710696; POPTRDRAFT_764587; POPTRDRAFT_764595; POPTRDRAFT_826770; RCOM_1591970;

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Powdery mildew resistance protein, RPW8 domain	IPR008808	-	-
Sma3		IPR014011	-	-
Sma3	Leucine-rich repeat-containing protein 40	IPR015766	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G33300.1	ADR1-L1 ADR1-like 1 chr4:16051162-16054005 REVERSE LENGTH=816	8.0e-38	48%
RefSeq	Arabidopsis thaliana	NP_195056.2	putative disease resistance protein ADR1-like 1 [Arabidopsis thaliana]	1.0e-37	48%
RefSeq	Populus trichocarpa	XP_002327103.1	nbs-lrr resistance protein [Populus trichocarpa]	9.99967e-42	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q1L6F3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 202 - 777

Fln protein: TSRTQ*SLTELRKGIFELMWGLGNMSRFNGNQSNLKLPIMLDFNMDHCCDLEELPVGICDMSSAQKWSITNCHLLRKLPDDLGRLSSLRMLRISACLGLKVLPASIGKLGKLEYMDISLCECLKELPEEIGQLKKLEELDMRECSRLRKLPKSVGGLKSLKHVICDEKIGQQWNRLKSFSATMDLRVEIVEAHFSLDWLDG*

Protein Length: 203

Fln nts: ACTTCAAGAACACAGTAAAGTCTTACAGAACTTAGAAAAGGTATCTTTGAGCTTATGTGGGGGCTTGGAAATATGTCCCGGTTCAATGGAAACCAGTCGAATCTAAAGCTTCCCATAATGCTAGATTTTAACATGGATCATTGCTGTGATTTGGAGGAGTTGCCCGTTGGTATTTGTGACATGTCTTCAGCTCAAAAGTGGTCTATCACTAACTGTCACCTTCTTCGAAAGTTACCTGATGATCTTGGGAGGCTCAGTTCTTTAAGAATGTTAAGAATATCTGCATGTCTAGGTCTGAAAGTGCTTCCAGCATCTATTGGAAAACTTGGGAAGCTGGAATATATGGACATTTCTTTATGTGAGTGCTTGAAAGAACTTCCTGAGGAAATAGGGCAGCTGAAGAAACTCGAGGAGCTTGACATGAGAGAGTGTTCTCGGTTGAGGAAGCTGCCTAAATCAGTTGGAGGGCTGAAATCTCTAAAGCATGTTATATGTGATGAAAAGATTGGGCAGCAATGGAATCGTCTTAAAAGCTTTTCTGCTACTATGGATCTTAGAGTTGAAATTGTAGAAGCTCACTTCAGCTTGGATTGGCTGGATGGTTAA___GATCTCTCTCAAACAGGATGCCAAGTGCAAGTAGACTGGATCAGGATGAGTGCAGACATGTTATCCATGTTCTACGGGCATCATTGCCTCTTCAGAAATTAGTTATGCGTAGTTTCAAAGCAGTGTGTCTAGTCCGGGTGATATATCTAAATAAATAGTGGTAAAGAATACCAGTGTGTATCTAGGGTGTCTTAGTCATCCGTAGTTTCAAAGCAGTGTGGCTAGTCCGGGTGGTATATCTAAATAAATAGTGGTAAAGAATACAAGTGTGTATCTGGGGTGTCTAGTTGTCATCGTAACATTAAGGACTTTTTAAATATTGTATTGTAAGAGTAAATGACTTTAATGCATTGTGTTTTAAGACTTTAAATATTGTCTTTTAAGATTAAAAGTCTGCTTAAGATTATAAGTTCACTTCAATTGTGGACAGAAGTGAACAAGGACAAATTTGTAATGGATTTGTGGTGTACGTAAAAAAATTTCAAAATTTGCTTAAAA

Fln Alignment:

Contig20902___LTELRKGIFELMWGLGNMSRFNGNQSNLKLPIMLDFNMDHCCDLEELPVGICDMSSAQKWSITNCHLLRKLPDDLGRLSSLRMLRISACLGLKVLPASIGKLGKLEYMDISLCECLKELPEEIGQLKKLEELDMRECSRLRKLPKSVGGLKSLKHVICDEKIGQQWNRLKSFSATMDLRVEIVEAHFSLDWLDG
Q1L6F3_______________LQKLEKVSLSLCEGLGNMSRFNGNQSNLKLPVMLDFNMDHCCDLEELPLGICDMSSAQKWSITNCHLLRKLPDDLGRLSSLRMLRISACLGLKELPASIGKLGKLEYMDISLCECLKELPEEIGQLKKLEELDMRECARLRKLPKSVGGLKSLKHVICDEKIGQQWNRLKSFSATMDLRVEIVEAHFSLDWLDG

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
596		87		12	0.992554
682		87		12	0.992554
689		87		12	0.992554
693	12		87		0.992554
714		16	83		0.994512
716			83	16	0.994512
754		45		54	1.0
804		70		30	1.0
828			33	66	1.0
952	16			83	0.994512
984		80	20		0.995493
993		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain