SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20774

Length: 398 nt

UniGene Fasta

>sp_v3.0_unigene20774
GTGAACTGTCTTAGGGATAGTGTACTTGCTTTCTCACACAATGTGCCTGGGACAACTGCAAGGGAGGTGATGGAAATGGTCTTAGCGGCGCAATATGACCCAATGAAAGAGATAGGAGCATCTTCAAAGTCATCAGCAGGATTCATCCCCCATGGACCTGGTGCAGTTCGTGATATTGCTGAGGATATCAGAAATGAATTACCTCAGGCGCAGGCCCATTAAACAATAAACATTATAAATACTAAAAGTACATATGAAGTGTCAAATTTCAGAATATAAGCACAATGTGTACAACGATGTTTATAGCTTACCGTCAAATTTCAGAATATAAGCACATTGTAGTACAACGATGTTTATAGCTTACCGTTTGCATTTTGAGTTTTCTTATTTTTGATGAC

Ace file of the UniGene sp_v3.0_unigene20774

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Hypersensitive-induced reaction protein 2 (Fragment) n=1 Tax=Hordeum vulgare subsp. vulgare RepID=Q8H1V9_HORVD	-	-	1.0e-19	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Hypersensitive-induced response protein	-	-	9.163e-31	-

Source	Gene names
Sma3	AT1G69840; At1g69840; At3g01290; At5g62740; GSVIVT00000093001; GSVIVT00028994001; HIR; HIR1; HIR2; HIR3; LOC_Os10g32700; Lj-HIR1; MQB2.6; OJ1051_A08.5; OJ1198_B10.17; OSJNBa0071K18.18; Os05g0591900; Os08g0398400; Os09g0361200; Os10g0464000; OsI_21211; OsI

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	myosin complex	GO:0016459	Cellular Component	-
Sma3	motor activity	GO:0003774	Molecular Function	-
Sma3	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity	GO:0003871	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3		GO:0047210	Molecular Function	-
Sma3	methionine biosynthetic process	GO:0009086	Biological Process	-
Sma3	cellulose biosynthetic process	GO:0030244	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Band 7 protein	IPR001107	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Methionine synthase, vitamin-B12 independent	IPR002629	-	-
Sma3	Alpha-1,4-glucan-protein synthase, UDP-forming	IPR004901	-	-
Sma3	Kinetochore protein Ndc80	IPR005550	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G62740.1	HIR1, ATHIR1 SPFH/Band 7/PHB domain-containing membrane-associated protein family chr5:25201320-25202535 FORWARD LENGTH=286	1.0e-24	69%
RefSeq	Arabidopsis thaliana	NP_201080.1	Hypersensitive-induced response protein 1 [Arabidopsis thaliana]	2.0e-24	69%
RefSeq	Populus trichocarpa	XP_002318609.1	predicted protein [Populus trichocarpa]	3.0e-26	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NL10

Fln msg: your sequence is shorter than subject: 74 - 284

Fln protein: VNCLRDSVLAFSHNVPGTTAREVMEMVLAAQYDPMKEIGASSKSSAGFIPHGPGAVRDIAEDIRNELPQAQAH*

Protein Length: 75

Fln nts: GTGAACTGTCTTAGGGATAGTGTACTTGCTTTCTCACACAATGTGCCTGGGACAACTGCAAGGGAGGTGATGGAAATGGTCTTAGCGGCGCAATATGACCCAATGAAAGAGATAGGAGCATCTTCAAAGTCATCAGCAGGATTCATCCCCCATGGACCTGGTGCAGTTCGTGATATTGCTGAGGATATCAGAAATGAATTACCTCAGGCGCAGGCCCATTAA___ACAATAAACATTATAAATACTAAAAGTACATATGAAGTGTCAAATTTCAGAATATAAGCACAATGTGTACAACGATGTTTATAGCTTACCGTCAAATTTCAGAATATAAGCACATTGTAGTACAACGATGTTTATAGCTTACCGTTTGCATTTTGAGTTTTCTTATTTTTGATGAC

Fln Alignment:

Contig20774___VNCLRDSVLAFSHNVPGTTAREVMEMVLAAQY-DPMKEIGASSKSSAGFIPHGPGAVRDIAEDIRNELPQAQAH
A9NL10_______________VDGLRDSVIAFSDNVPGTTAREVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVSDVAEQIRNGLLQAQAH

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
238	75	25			0.996473
240	75			25	0.996473
313	16	83			0.994512
314			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain