SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20762

Length: 1557 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene20762

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethylene-forming enzyme n=1 Tax=Picea glauca RepID=Q40839_PICGL	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Flavonol synthase/flavanone 3-hydroxylase, putative	-	-	1.289e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Flavonol synthase.	EC:1.14.11.23	-	5.749e-14	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	5.749e-14	%
Sma3	Biosynthesis of phenylpropanoids	01061	5.749e-14	%
Sma3	Metabolic pathways	01100	5.749e-14	%
Sma3	Biosynthesis of secondary metabolites	01110	5.749e-14	%

Source	Gene names
Sma3	ACO; AT4g25300; AT4g25310; At1g17010/F20D23_29; At1g17020; At3g21420; At4g25300; At4g25310; EFE; F20D23.28; F24A6.140; F24A6.150; F6I1.30; GSVIVT00000476001; GSVIVT00003362001; GSVIVT00006399001; GSVIVT00007225001; GSVIVT00007228001; GSVIVT00007238001; GS

Source	GOs	Term	Type	Identity
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	-
Sma3	organ senescence	GO:0010260	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Isopenicillin N synthase	IPR002283	-	0.0	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G21420.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein chr3:7541579-7543221 FORWARD LENGTH=364	46%
RefSeq	Arabidopsis thaliana	NP_566685.1	oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002315563.1	predicted protein [Populus trichocarpa]	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW44

Fln msg:

Fln protein: MAAVDANPFVNPKGGKVIPVESVQELVKNHVHPNAAEAVPPRYIRPQEERPTVSLIASSEFSIPVIDMKKLIFLQGQEDQRKQEMDMLSDACQEWGFFQIVNHGIPNTLIDDIKSVAKEFFSLPLEEKLKYAPQAGASQGYGKMFVTADDQTLDWGDLLALALMPNSIKNLALWPTVPTHFRDTVESYAIEIERVAQEVLSLFAENLHLEDADYFKNVFGSEPMNMMRMNFYPPCPRPDLVLGLSPHSDGGGITLLLQDDESVGLHVRKNNRWIPVQPIPYGLVVNIGDLVEVMTNGRYKSVEHRAVTNEERARLSIALFYNASIDAEVAPSSKLVDEHHPCLYRKFIHEEYIRYYISRQLKGKHNLADFAKIDRTNS*

Protein Length: 380

Fln nts: ATGGGGAAATTCCATGTGGATTAAATATTGAGGCATATCTTGAGATAAGGAGGCTGCGTTCTTCCTCTGCTATC_-_ATGGCCGCTGTAGACGCAAACCCTTTCGTGAATCCAAAGGGGGGCAAAGTGATCCCCGTGGAGAGTGTGCAGGAGCTTGTCAAAAATCATGTCCACCCAAATGCTGCTGAAGCTGTTCCCCCGCGTTACATCAGACCCCAGGAAGAGAGGCCGACGGTCTCATTAATCGCTTCTTCTGAATTCTCAATCCCTGTTATTGACATGAAGAAGCTGATTTTCTTGCAGGGACAAGAGGATCAAAGAAAACAAGAAATGGACATGCTTTCCGATGCCTGCCAGGAATGGGGTTTCTTCCAGATTGTGAACCATGGAATTCCTAATACTTTAATAGATGACATAAAATCTGTAGCTAAAGAATTCTTCAGCCTTCCATTAGAAGAAAAGCTGAAATATGCTCCACAAGCAGGAGCCTCCCAGGGTTATGGTAAGATGTTTGTGACAGCTGATGATCAAACTTTGGACTGGGGTGACTTGCTGGCTTTGGCACTCATGCCGAACAGCATTAAGAATCTTGCCCTCTGGCCAACCGTTCCCACACATTTCAGGGATACAGTTGAGAGTTATGCAATTGAGATAGAAAGGGTCGCTCAAGAGGTGTTGAGTTTGTTCGCTGAAAACCTGCATCTGGAGGATGCTGATTATTTCAAGAATGTGTTTGGGTCAGAGCCTATGAATATGATGCGAATGAACTTCTACCCGCCTTGCCCTAGACCAGATCTTGTTCTTGGATTGAGTCCTCACTCAGATGGAGGGGGAATAACTCTGCTCCTGCAGGATGACGAGTCTGTAGGCTTGCATGTCCGGAAGAACAATCGATGGATTCCTGTGCAGCCCATTCCATACGGACTGGTTGTAAACATTGGGGACTTGGTAGAGGTAATGACAAACGGGAGATACAAAAGCGTAGAGCACCGGGCAGTAACAAACGAAGAGAGAGCCAGACTTTCGATTGCTCTGTTCTATAATGCGAGTATAGATGCAGAGGTGGCTCCCTCATCGAAGTTAGTAGATGAACACCATCCATGCTTGTACAGGAAGTTCATACACGAAGAATACATTCGTTATTACATTTCCAGACAACTCAAAGGAAAACACAACCTGGCCGACTTCGCCAAAATTGATAGAACCAATAGCTAA___GTTCGATAATTGTTTCTACGCAAATTGGGCTGTCTATTGTCCTCAGCAGAGAATCTTTTAATAAAGGTTGAGGAGGTACGTGATAAGAAATTTGTATGGTACAATGTTCTTAGTAAGAGAACAGTAGTTATCATGTGAGGTGAAAGTTGTCTTATCCAATGTTGAGTAGGTATGTGATGTGAAAGGTGTCTTTTATGGAGATGCTTTAATATTTATAAAGAAGTTATGTGATATGAAAATTCTTTTAACAAGTAGAAAGTTACTGTGTAATTACCTTGTTTGATATTTTTATTAAATAACATTATTTTTTAATAAAGTAGGTGATAGTAGAAAGTTACTTTGTAAG

Fln Alignment:

Contig20762___AVDANP--FVNPKGGKVIPVESVQELVKNHVHPNAAEAVPPRYIRPQEERPTVSLIASSEFSIPVIDMKKLIFLQGQED-QRKQEMDMLSDACQEWGFFQIVNHGIPNTLIDDIKSVAKEFFSLPLEEKLKYAPQAGASQGYGKMFVTADDQTLDWGDLLALALMPNSIKNLALWPTVPTHFRDTVESYAIEIERVAQEVLSLFAENLHLEDADYFKNVFGSEPMNMMRMNFYPPCPRPDLVLGLSPHSDGGGITLLLQDDESVGLHVRKNNRWIPVQPIPYGLVVNIGDLVEVMTNGRYKSVEHRAVTNEERARLSIALFYNASIDAEVAPSSKLVDEHHPCLYRKFIHEEYIRYYISRQLKGKHNLADFAKID
A9NW44_______________ATGAGPDSFVNPKWGKSMQVESVQELALN-VDP---KAVPPRYIRIPEERPTSSLLVSRDSAIPLIDMKKLI--PHREDYQRQQEMERLSNACQEWGFFQIVNHGIPHSLLDAIKGVAKEFFNLPLQEKQKCAPQAGDVQGYGKTFVVAEDQTLDWGDLLALALMPNNLKNLALWPTVPTNFRDTVERYAIEVERVAQEVLSLFAENLHLE-AEYFKDKFGSEPTNLMRMNLYPPCPRPDLVLGLSPHSDGGGITLLLQDDQTEGLHVRKNNQWIPVQPIPYALVVNIGDLVEVMTNGRYKSVEHRAVTSQERARLSVALFYSAGIDAEVAPSSKIVDEDQQLLYRKFIHEEYIRYYLSRQLKGKHPLADFAKLD

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
627		83		16	0.994512
643	83		16		0.994512
659	11		88		0.923564
661		88	11		0.923564
663		88	11		0.923564
689	22		77		0.999999
695		90		10	0.90298
1352			10	90	0.90298
1384		9	90		1.0
1386			18	81	1.0
1434	66		33		1.0
1463	23			76	1.0
1515		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain