SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20486

Length: 2491 nt

UniGene Fasta

>sp_v3.0_unigene20486
ATGGGGGAGAAATGGTTACGCGAAATTTCTAAACATCAAATATGGCCAAAATGCCCTGTAATGCGCAATTGTCCGTCAAATTACAACTCCGGTCATTACCGTATGCTGCCGCCGAGCCCGTTGTCCACGGGTGAAAAAATGCCATTTGTTAAATTGGAAAAAAATATCATTCACAATTTCTTTTTTGGAACAGGATGTCTCACATTTAAAGACAACATCGTGAACTGGGAGCACACTCATGCTTTGATTGCCAACTTTGTTTAAAGCGTTCGCTACATGCTCCAAGTGTTTAAGCGAATTACTGCGAGAAGAGAAATCGACCCACATAGCAGAAGCACTTTTGCAGAGATCCAATTTCGTTTGATTGGAGAGTCACCGTGAAGTTGGCAGGATTCTATATTATTCAACAAAATGGGTGATATATTTGAGGATGAAAATGAGACCGCACTCACCATTGACGAGTACATAGAGAGCGTGGACGCCCAAGAATTGGAAGCCGATTTGGTATTGGGAGGAGATGAGGGAAAAGAATGCACGTATCCAAAGGGGTATATGAACAGACAGGCTGTTTTCTCATGCCTGACTTGCGTCCCCCCAGGCAATGCTGGCGTATGTACAGCCTGCTCTTTAACTTGTCACGAAGGCCATGAAGTGGTAGAGTTGTGGACGAGAAGGCGATTTAGATGTGACTGTGGGAATTCAAAGTTTGGCAGTATCTCCTGTAAGCTTATTCCAGACAAAGATTCTGAAAATCATAACAATTCTTACAATCAGAACTACAAGGGCTTGTACTGTACTTGTCACCGACCATATCCTGACCCTAATGGGGAAACCCAAGGAGAGATGATTCAGTGCTGTATCTGTGAGGACTGGTTTCATGAGAAACATCTTGGTTTCCAAGCAAGAGAGCAGATACCGAAAGATGATGAAGGGGAACCCATGTACGAGGATTTTATTTGCCAAAACTGTGCTAGTCGATGTTCCTTCTTGTACTTTTACCAAGAGAGTTTTATTTTACCATCAGCAAATGGTGGAACATCTACTAACATTGAACACACCAAGCAGTATTTGCAGGAAGAGAATTGTATTGAGAATGATGCTGAAAAAGGGTGTTTAGAAATAGTTCTTAATGCGGAGGAGATAGTTAATTCTCAGCTGCCCAATCCTAGCATTGATATTGCTAAGGATGACAATCAGTTAAATAGACCCACTACTCTCATCAGTGATAATGATTATGTTGGCGATCATTTAAAACAGCAAACTCATGCAGTTCACAAAAGGAACCATTCTAGACCTGGTGCTGCAAATCCAATAGCAGATTCAGGAGAGGCTCTCCCCCCTGTGTCTCATGCATCTGATATCAACTCATCAGAAGGCTCTGGCATTGTCAATGGGATGGCAACATGTTCAGAAGCAGAAAGGCCAACTGCCAAAGAGATTAGTTTTCCTGGGCAGTCGATTTTCAATTCCACTTTTCCATCAGATCCGGTCATTAGTGGAGAAAACTCTGGAGATCAGGAGCCACTTTGCAAGCTTAGGGGCAAGGGAGACATTCCTTTACATCGAATGGATACCAAAAAACCTTTATTTATGGGCACAAATTGGAGGGAGCGTCTCTGTAGGTGTAAATGTTGTTCTGATCTATTTAGAGATAAGGGGGTTGCTTTCTTGCTTGATAAAAGTGACACACTTGATGAGTATGAGAAGATTGCTCAGAAGAGGAGAGAAGAGAAATTGCAACAACAGGAAGGGGTTCAGGCAGCGTTCCTTCAGAATCTTGGTCATGTTCAACAAATTGAGCTCATGACTGGCATTAATGACATGAAAAATGAACTACGTTCTTTTCTTGAATCTTTAGACACGTCAAAAGTTGTTACAGGTGAAGACATTCGAGAGGTTTTTGATAATCTTAAGCGGAAGAGACGTCGTCTCGATTGATACCCTGGTGGTGAAAGAATTTTGACCTGTCTCTGTTACGACCATACAAGGGTACACATGGACAATATACGCTCACAAGAAAGAAATGGCATACCCACCAGAAAATAATCTCAAAAGATGATATTTATTTGTTGTCAGCTAATGCTCAGTACAATGTTAGGGTTTACTTATTTTGCTATAGTGCCCTTTTTCATGAAGTCATATCTTATCGGCTTTAATAATTAATAACTAAAATATCTCTAATCTTCGTAATATAGTTCTGAATACCTTCAAGGGTGATTTAATAGTTCTGAATACCTTCAAGGGTGATTTAATGTATGTATTTTTTATGTCACTGGTCCAGTATGTCCAACATGGGTTGGGTTGGTGTTGTGGGATTCTAGTGCCTGGATCATCCTTAGATAAGTCGGACATAGCATGTACACAGAAAAATAATTCCTTGGAAAACATATATTTTTTTCATTAATGAAGTGGACGTTATCTTCCGGCTTTGGGAAAATACATCTGCACTTCCGCTTATGTATTGTAAATATACTCTCTTATGTTTGCTTTC

Ace file of the UniGene sp_v3.0_unigene20486

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin-protein ligase UBR7 [Arabidopsis thaliana] ref\|NP_974600.1\| ubiquitin-protein ligase UBR7 [Arabidopsis thaliana] ref\|NP_001078436.1\| ubiquitin-protein ligase UBR7 [Arabidopsis thaliana] dbj\|BAH30533.1\| hypothetical protein [Arabidopsis thaliana]	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	43%

Source	Gene names
Sma3	AT4g23860; At4g23860; GSVIVT00006755001; Os06g0529800; OsI_23224; OsJ_21552; P0438E12.4; PHYPADRAFT_143812; PHYPADRAFT_160129; POPTRDRAFT_548339; POPTRDRAFT_817413; RCOM_1692040;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, PHD-type	IPR001965	-	0.0	-
Sma3	Zinc finger, N-recognin	IPR003126	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G23860.1	PHD finger protein-related chr4:12409336-12411336 FORWARD LENGTH=452	60%
RefSeq	Arabidopsis thaliana	NP_001078436.1	ubiquitin-protein ligase UBR7 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002303646.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7M907

Fln msg: your sequence is longer than subject: 509 - 453

Fln protein: MGDIFEDENETALTIDEYIESVDAQELEADLVLGGDEGKECTYPKGYMNRQAVFSCLTCVPPGNAGVCTACSLTCHEGHEVVELWTRRRFRCDCGNSKFGSISCKLIPDKDSENHNNSYNQNYKGLYCTCHRPYPDPNGETQGEMIQCCICEDWFHEKHLGFQAREQIPKDDEGEPMYEDFICQNCASRCSFLYFYQESFILPSANGGTSTNIEHTKQYLQEENCIENDAEKGCLEIVLNAEEIVNSQLPNPSIDIAKDDNQLNRPTTLISDNDYVGDHLKQQTHAVHKRNHSRPGAANPIADSGEALPPVSHASDINSSEGSGIVNGMATCSEAERPTAKEISFPGQSIFNSTFPSDPVISGENSGDQEPLCKLRGKGDIPLHRMDTKKPLFMGTNWRERLCRCKCCSDLFRDKGVAFLLDKSDTLDEYEKIAQKRREEKLQQQEGVQAAFLQNLGHVQQIELMTGINDMKNELRSFLESLDTSKVVTGEDIREVFDNLKRKRRRLD*

Protein Length: 510

Fln nts: ATGGGGGAGAAATGGTTACGCGAAATTTCTAAACATCAAATATGGCCAAAATGCCCTGTAATGCGCAATTGTCCGTCAAATTACAACTCCGGTCATTACCGTATGCTGCCGCCGAGCCCGTTGTCCACGGGTGAAAAAATGCCATTTGTTAAATTGGAAAAAAATATCATTCACAATTTCTTTTTTGGAACAGGATGTCTCACATTTAAAGACAACATCGTGAACTGGGAGCACACTCATGCTTTGATTGCCAACTTTGTTTAAAGCGTTCGCTACATGCTCCAAGTGTTTAAGCGAATTACTGCGAGAAGAGAAATCGACCCACATAGCAGAAGCACTTTTGCAGAGATCCAATTTCGTTTGATTGGAGAGTCACCGTGAAGTTGGCAGGATTCTATATTATTCAACAAA_-_ATGGGTGATATATTTGAGGATGAAAATGAGACCGCACTCACCATTGACGAGTACATAGAGAGCGTGGACGCCCAAGAATTGGAAGCCGATTTGGTATTGGGAGGAGATGAGGGAAAAGAATGCACGTATCCAAAGGGGTATATGAACAGACAGGCTGTTTTCTCATGCCTGACTTGCGTCCCCCCAGGCAATGCTGGCGTATGTACAGCCTGCTCTTTAACTTGTCACGAAGGCCATGAAGTGGTAGAGTTGTGGACGAGAAGGCGATTTAGATGTGACTGTGGGAATTCAAAGTTTGGCAGTATCTCCTGTAAGCTTATTCCAGACAAAGATTCTGAAAATCATAACAATTCTTACAATCAGAACTACAAGGGCTTGTACTGTACTTGTCACCGACCATATCCTGACCCTAATGGGGAAACCCAAGGAGAGATGATTCAGTGCTGTATCTGTGAGGACTGGTTTCATGAGAAACATCTTGGTTTCCAAGCAAGAGAGCAGATACCGAAAGATGATGAAGGGGAACCCATGTACGAGGATTTTATTTGCCAAAACTGTGCTAGTCGATGTTCCTTCTTGTACTTTTACCAAGAGAGTTTTATTTTACCATCAGCAAATGGTGGAACATCTACTAACATTGAACACACCAAGCAGTATTTGCAGGAAGAGAATTGTATTGAGAATGATGCTGAAAAAGGGTGTTTAGAAATAGTTCTTAATGCGGAGGAGATAGTTAATTCTCAGCTGCCCAATCCTAGCATTGATATTGCTAAGGATGACAATCAGTTAAATAGACCCACTACTCTCATCAGTGATAATGATTATGTTGGCGATCATTTAAAACAGCAAACTCATGCAGTTCACAAAAGGAACCATTCTAGACCTGGTGCTGCAAATCCAATAGCAGATTCAGGAGAGGCTCTCCCCCCTGTGTCTCATGCATCTGATATCAACTCATCAGAAGGCTCTGGCATTGTCAATGGGATGGCAACATGTTCAGAAGCAGAAAGGCCAACTGCCAAAGAGATTAGTTTTCCTGGGCAGTCGATTTTCAATTCCACTTTTCCATCAGATCCGGTCATTAGTGGAGAAAACTCTGGAGATCAGGAGCCACTTTGCAAGCTTAGGGGCAAGGGAGACATTCCTTTACATCGAATGGATACCAAAAAACCTTTATTTATGGGCACAAATTGGAGGGAGCGTCTCTGTAGGTGTAAATGTTGTTCTGATCTATTTAGAGATAAGGGGGTTGCTTTCTTGCTTGATAAAAGTGACACACTTGATGAGTATGAGAAGATTGCTCAGAAGAGGAGAGAAGAGAAATTGCAACAACAGGAAGGGGTTCAGGCAGCGTTCCTTCAGAATCTTGGTCATGTTCAACAAATTGAGCTCATGACTGGCATTAATGACATGAAAAATGAACTACGTTCTTTTCTTGAATCTTTAGACACGTCAAAAGTTGTTACAGGTGAAGACATTCGAGAGGTTTTTGATAATCTTAAGCGGAAGAGACGTCGTCTCGATTGA___TACCCTGGTGGTGAAAGAATTTTGACCTGTCTCTGTTACGACCATACAAGGGTACACATGGACAATATACGCTCACAAGAAAGAAATGGCATACCCACCAGAAAATAATCTCAAAAGATGATATTTATTTGTTGTCAGCTAATGCTCAGTACAATGTTAGGGTTTACTTATTTTGCTATAGTGCCCTTTTTCATGAAGTCATATCTTATCGGCTTTAATAATTAATAACTAAAATATCTCTAATCTTCGTAATATAGTTCTGAATACCTTCAAGGGTGATTTAATAGTTCTGAATACCTTCAAGGGTGATTTAATGTATGTATTTTTTATGTCACTGGTCCAGTATGTCCAACATGGGTTGGGTTGGTGTTGTGGGATTCTAGTGCCTGGATCATCCTTAGATAAGTCGGACATAGCATGTACACAGAAAAATAATTCCTTGGAAAACATATATTTTTTTCATTAATGAAGTGGACGTTATCTTCCGGCTTTGGGAAAATACATCTGCACTTCCGCTTATGTATTGTAAATATACTCTCTTATGTTTGCTTTC

Fln Alignment:

Contig20486___FEDENETALTIDEYIESVDAQELEADLVLGGDEGKECTYPKGYMNRQAVFSCLTCVPPGNAGVCTACSLTCHEGHEVVELWTRRRFRCDCGNSKFGSISCKLIPDKDSENHNNSYNQNYKGLYCTCHRPYPDPNGETQGEMIQCCICEDWFHEKHLGFQARE----QIPKDDEGEPMYEDFICQNCASRCSFLYFY-QESFILPSANGGTSTNIEHTKQYLQEENCIENDAEKGCLEIVLNAEEIVNSQLPNPSIDIAKDDNQLNRPTTLISDNDYVGDHLKQQTHAVHKRNHSRPGAANPIADSGEALPPVSHASD-INSSEGSGIVNGMATCSEAERPTAKEISFPGQSIFNSTFPSDPVISGENSGDQEPLCKLRGKGDIPLHRMDTKKPLFMGTNWRERLCRCKCCSDLFRDKGVAFLLDKSDTLDEYEKIAXXXXXXXXXXXXGVQAAFLQNLGHVQQIELMTGINDMKNELRSFLESLDTSKVVTGEDIREVF
D7M907_______________FEDEAEGTVTINEYIESLDAEELAADLVLGGDEGDECTYPKGYMKRQAIFSCITCTPDGNAGICTACCLSCHDGHELLELWTKRNFRCDCGNSKFGTLACKLLPSKDVENSENSYNHNFKGFYCTCDRPYPDPNVEEQVEMIQCCLCEDWFHEEHLGLKPSDSVGSQIPKDEEGEPIYEDFICQNCSPVCSFLTLYPEKLWVVAKVESTGSAN--------------------ACSETIESSKTHMDSEPCQPENGSDAEKSVVGKCSEKIDD--------------------SEPGQPENGTEAEKSV--VRKCSEKIDESEAGQPENS----TEAEKFVVRKCS---EKI-------------DDSGGPVPATGCVIRTDLNLCPEFEKKPLFLTKNWRNILCKCEKCLEMYKQRGVSYLLDAEDTIVEYEKKAKEKRTEKLEKQEGEALDLLNNLDHVSKVELLHGIKDFQDELQGLMESAGPSKAITAADIEQMF

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
289	87		12		0.992554
290			87	12	0.992554
294			12	87	0.992554
295		12	12	75	0.975346
297	87	12			0.992554
298			87	12	0.992554
330	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain