SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20385

Length: 1227 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene20385

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Carbonic anhydrase, putative n=1 Tax=Ricinus communis RepID=B9STU9_RICCO	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	carbonate dehydratase activity	GO:0004089	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	one-carbon metabolic process	GO:0006730	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha carbonic anhydrase	IPR001148	-	0.0	-
Sma3		IPR018340	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G08080.1	ATACA7, ACA7 alpha carbonic anhydrase 7 chr1:2517022-2518546 REVERSE LENGTH=275	45%
RefSeq	Arabidopsis thaliana	NP_172287.1	carbonic anhydrase [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002328312.1	predicted protein, partial [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP26

Fln msg:

Fln protein: MAPTVISAFITFALILFIAGVRPQEVEDEKEFEYKEGPKGPENWWKLNDEWWACGNGTEQSPIDVVKSNAILSPDLGTLHRHYYPENAILVNRGHDIMVNWAEGAGSLEIQGKSFTLYQCHWHHPAEHTINGEQHPLEIHLVHQAEDSEIAVIGIIYRNGPSDPFLSQLMDAIHAIAHMEPPVEPLGPVNPNDIKFDDSRYYRYMGSLTTPACTEGVIWTVIDEIKTVSEDQVRALQAAVHDGYDQNARPIQSLNGRVVGIYSEEWTSS*

Protein Length: 271

Fln nts: AAGCAGTGGGTATCAACGCAGCGTACATGGGGATCTCGGTACTAGGTAGGCACCTCACTTTCTGAGTTTATGTTATTTCATTTTCTTTATTGCCTCTCTTCCCTAGACCTACTACTATCCTACTCGTGCTTTCCTTCGCTTCCCAACT_-_ATGGCGCCAACTGTAATATCAGCATTCATTACGTTTGCCCTCATCCTCTTCATCGCCGGGGTTCGACCTCAGGAAGTTGAGGACGAGAAGGAGTTCGAGTACAAAGAGGGTCCCAAGGGGCCTGAGAACTGGTGGAAGCTCAACGACGAATGGTGGGCCTGTGGGAACGGGACGGAGCAGTCTCCCATTGATGTGGTGAAGAGCAACGCCATATTATCTCCGGACCTCGGCACGCTCCACAGACACTATTACCCTGAAAATGCAATCCTTGTGAACAGGGGTCACGACATCATGGTGAACTGGGCTGAAGGCGCCGGTAGTCTTGAGATACAAGGGAAAAGCTTCACACTGTATCAATGCCATTGGCACCACCCGGCGGAGCACACCATAAATGGAGAGCAGCATCCACTAGAAATCCATCTGGTGCACCAAGCGGAGGACAGCGAAATTGCCGTGATTGGAATCATTTACAGGAATGGCCCGTCTGACCCTTTCCTGTCGCAGTTAATGGATGCGATCCACGCCATCGCGCATATGGAACCGCCAGTGGAACCCCTGGGTCCGGTGAATCCGAATGACATAAAATTCGATGACAGTAGATATTACAGGTACATGGGATCTCTCACCACCCCTGCTTGCACGGAGGGAGTCATTTGGACCGTGATTGACGAGATAAAGACAGTGTCGGAAGACCAAGTGAGGGCCCTGCAAGCAGCTGTCCATGATGGTTATGATCAAAATGCTAGACCTATCCAATCCTTAAATGGAAGAGTTGTTGGCATTTACAGTGAAGAATGGACTTCTTCTTGA___AGTGGAAAAAAGTTGTACCCTTATAGGAATAATGTTGTGCCTTACCTAGCATAACTATTTCTTAGATTAAGAAAGCATGACCAAGTATAGTTAATATATATTACATGTAATAGTTTTATTAAATAAGGTAGATTAGATATCTGGGAGGTTGTTGTGATTATCATCTTTCATATTAAAGATGAACTCTTAAGATAAGTTCTTTTTATGACATGTGAAAGAGTATTATATTTGAAACTTGGGTTATTGAGTGGTCACTCATCTTTAAATCT

Fln Alignment:

Contig20385___MAPTVISAFITFALILFIAGVRPQXXXXXXXXXXXXGPKGPENWWKLNDEWWACGNGTEQSPIDVVKSNAILSPDLGTLHRHYYPENAILVNRGHDIMVNWAEGAGSLEIQGKSFTLYQCHWHHPAEHTINGEQHPLEIHLVHQAEDSEIAVIGIIYRNGPSDPFLSQLMDAIHAIAHMEPPVEPLGPVNPNDIKFDDSRYYRYMGSLTTPACTEGVIWTVIDEIKTVSEDQVRALQAAVHDGYDQNARPIQSLNGRVVGIYSEEW
A9NP26_______________MARSVIPAFIAFALILFIAGVRTQEIDDEREFEYKEGPKGPEHWGELKEEWKACGRGTQQSPIDVVKRNAIISPNLGTLHRIYHPANATLVNRGHDIMVNWSEGAGSVEIKGKRFTLKQCHWHTPAEHTIDGKQHPLEIHLVHQAVDGEIAVIGIIFEFGRPDTFLAELRDAIMAIAHMEPPVKPLGMVDPYDIKFDSRKYYRYMGSLTTPPCTEGVIWNVIDEVRTVSEDQVRALQEAVHDGYEKNARPIQPLNGRIVGLYDHEY

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
160		12	87		0.992554
289		16		83	0.994512
447	75		25		0.996473
592	50		50		1.0
624	78		21		1.0
668		94		5	0.998744
677		88		11	1.0
680	8		91		1.0
878		4		95	0.997218
889	92		2		0.991359

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain