SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20332

Length: 1495 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene20332

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase Ck2 regulatory subunit 2 [Nicotiana tabacum]	-	-	0.0	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Casein kinase II beta chain, putative	-	-	6.41e-16	-

Source	Gene names
Sma3	26.t00110; 40.t00069; At2g44680; At3g60250; At4g17640; At4g17640/dl4855w; At5g47080; CHLREDRAFT_116537; CK2B; CK2_2; CKB1; CKB2; CKB3; Ck2b; F16B22.17; F27H5_40; GSVIVT00006443001; GSVIVT00015872001; GSVIVT00019032001; Hvck2b; K14A3.3; LOC_Os10g41520; MIC

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	protein kinase CK2 complex	GO:0005956	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	transcription factor binding	GO:0008134	Molecular Function	-
Sma3	protein kinase CK2 regulator activity	GO:0008605	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	positive regulation of circadian rhythm	GO:0042753	Biological Process	-
Sma3	photoperiodism, flowering	GO:0048573	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Casein kinase II, regulatory subunit	IPR000704	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Casein kinase II, regulatory subunit, alpha-helical	IPR016149	-	-
Sma3	Casein kinase II, regulatory subunit, beta-sheet	IPR016150	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G44680.1	CKB4 casein kinase II beta subunit 4 chr2:18426898-18428166 REVERSE LENGTH=283	86%
RefSeq	Arabidopsis thaliana	NP_181996.1	casein kinase 2, beta polypeptide [Arabidopsis thaliana]	86%
RefSeq	Populus trichocarpa	XP_002301241.1	predicted protein [Populus trichocarpa]	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPQ3

Fln msg: Separated hits, possible frame ERROR between 681 and 683, your sequence is longer than subject: 381 - 297

Fln protein: MYKDRNTSTEGRTGASKSELGTLRDPSDRKRINDALDKHLHLEKSPPSTSKGANGRLSIPSTSAGRRGPGDSRNASGLDKTNYAEDVVNSDTDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLxxGLSSQVPYYDYALDLILDVESSNDDILTEEQNELVESAAEMLYGLIHVRYILTSKGMNAMLEKYKNTDFGRCPRVYCSGQPCLPVGQSDIPRTSTVKIYCPKCEDVYYPRSKYQGSILQ*IMFSVQFSR*IRSCSEDMFPYFPSLICAL*IHCSIILTILLSDRC*AGAFLLFSRHY*LVFCHPNFLN*IQIPMEHISEPHFLIYF**HMHT*SHPGQCRAMFQRSLVLKSTKVHDEPSIMM*

Protein Length: 382

Fln nts: GTTCGGGGCGAGAGAAAGAGGAGGAGGGCATGGAGGAACCACCCAGATCTGCCTCTCTTCAACGCCAACACCAGCGCAGAAACCAAAACCAGGGGCAGAGAGTGTGAATGAGCAGGGTGGACGCGTGGGTGAATGAACAGCATTCGTTCCTTAATTCATTTCCATGGAATATCGGGTCGAAAATTAGCCACCCATATATGTTGATGGTGCTGAAGAATTTCAGGGTTAATTTATTCTAATTATTTAATCATCACAGTAGGTTGGGAGGAC_-_ATGTACAAGGACCGGAACACGTCAACGGAAGGCAGAACGGGGGCGTCAAAGTCAGAACTGGGCACTCTTCGGGATCCATCAGATCGGAAACGGATCAACGATGCACTGGATAAGCATCTCCATCTGGAGAAGTCGCCGCCCTCCACTTCAAAGGGAGCCAATGGCCGTTTGTCGATCCCATCGACATCGGCTGGGCGGCGTGGCCCGGGAGACTCACGGAATGCTAGCGGTTTAGACAAGACAAATTACGCTGAAGATGTGGTGAACTCTGATACAGATAGCGAAGAATCAGATGTCAGCGGTTCTGATGGAGATGACACATCCTGGATCTCTTGGTTCTGTAATTTAAGAGGCAATGAGTTCTTTTGTGAAGTTGATGATGAGTACATTCAGGATGATTTCAACCTTTGxxxTGGACTTAGTAGCCAAGTTCCATACTATGATTATGCCCTTGACCTGATTTTGGATGTGGAGTCATCTAATGATGATATCTTAACCGAGGAACAGAATGAGTTGGTGGAGTCGGCTGCAGAAATGTTGTATGGATTGATCCATGTCCGTTATATTTTAACAAGCAAGGGAATGAATGCCATGCTAGAGAAGTACAAGAATACTGATTTTGGAAGATGCCCAAGAGTTTACTGTTCAGGGCAACCGTGTCTTCCAGTTGGCCAATCTGACATTCCCCGGACAAGCACAGTGAAGATTTACTGTCCAAAGTGTGAAGATGTTTACTATCCAAGATCGAAGTATCAAGGCAGTATCCTTCAATAAATTATGTTTTCTGTTCAATTTTCTCGCTGAATAAGGTCATGTTCAGAAGATATGTTTCCCTATTTTCCTAGTTTAATATGCGCGCTTTGAATACATTGCTCGATTATTTTGACAATTCTCTTGTCAGACAGGTGTTGAGCAGGTGCTTTCTTACTTTTTTCGAGACATTATTGACTTGTTTTCTGTCACCCAAATTTCCTTAATTAGATTCAGATACCGATGGAGCATATTTCGGAACCACATTTCCTCATCTATTTTTGATGACATATGCACACATAAAGCCATCCAGGCCAATGCAGAGCTATGTTCCAAAGATCTTTGGTTTTAAAATCCACAAAAGTGCACGATGAACCAAGTATAATGATGTAA___CTGTAGTTAGTTGTGACAAGCAGTAGCTCTTGCCCACGAGGGTTGTACTTCATATTATTTTCATTAAATTGTTTAAGATATAAG

Fln Alignment:

Contig20332___MYKDRNTSTEGRTGASKSELGTLRDPSDRKRINDALDKHLHLEKSPPSTSKGANGRLSIPSTSAGRRGPGDSRNASGLDKTNYAXXXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDEYIQDDFNLCxGLSSQVPYYDYALDLILDVESSNDDILTEEQNELVESAAEMLYGLIHVRYILTSKGMNAMLEKYKNTDFGRCPRVYCSGQPCLPVGQSDIPRTSTVKIYCPKCEDVYYPRSKYQGS
B8LPQ3_______________MYKDRSTATEGRTGASKSELGTLRDPSDRKRINDALDKHLHLEKSPPSTSKGLNGRLSIPSTSAGRRAPGDSRNASALDKTNYAEDVEDSDTDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCxGLSSQVPYYDYALDLILDVESSNDDILTEEQNELVESAAEMLYGLIHVRYILTSKGMNAMLEKYKNTDFGRCPRVYCSGQPCLPVGQSDIPRTSTVKIYCPKCEDVYYPRSKYQGN

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1034	22		77		1.0
1037		18		77	1.0
1039	19	80			1.0
1041			14	80	1.0
1042		76	23		1.0
1044	80		19		1.0
1045		14	4	80	1.0
1046	90		9		0.999872
1047	76	4	4	14	1.0
1051	85			5	0.999793
1053		10	80		0.99967
1054	5		10	84	0.999846

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain