SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene19996

Length: 773 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene19996

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2B.10 n=5 Tax=Arabidopsis RepID=H2B10_ARATH	-	-	9.99967e-42	94%
FL-Next	tr=Putative histone H4; Pinus pinaster (Maritime pine).	-	-	0.0	97%
Sma3	Histone H2B	-	-	7.465e-36	-

Source	Gene names
Sma3	ABE2; At1g07790; At1g08170; At2g28720; At2g37470; At3g09480; At3g45980; At3g46030; At3g53650; At5g02570; At5g22880; At5g59910; CHLREDRAFT_100005; CHLREDRAFT_100008; CHLREDRAFT_100162; CHLREDRAFT_100236; CHLREDRAFT_100672; CHLREDRAFT_100722; CHLREDRAFT_102

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-
Sma3	mitotic chromosome condensation	GO:0007076	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H2B	IPR000558	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G22880.1	H2B, HTB2 histone B2 chr5:7652130-7652567 REVERSE LENGTH=145	94%
RefSeq	Arabidopsis thaliana	NP_197679.1	histone H2B [Arabidopsis thaliana]	94%
RefSeq	Populus trichocarpa	XP_002316408.1	histone H2, partial [Populus trichocarpa]	93%

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
251	14		85		0.993533
272	12		87		0.992554
293		57		42	1.0
333	90		10		0.90298
334	90			10	0.90298
335	90	10			0.90298
336			10	90	0.90298
338		90	10		0.90298
341		90		10	0.90298
342	90			10	0.90298
343			90	10	0.90298
344			10	90	0.90298
349		11	88		0.923564
353		22		77	0.999999
428			87	12	0.992554
498	42		57		1.0
500		14		85	0.999981
501			14	85	0.999981
509			85	14	0.999981
513	85		14		0.999981
514	85	14			0.999981
516			14	85	0.999981
520		14	85		0.999981
535	71		28		1.0
545	50		50		1.0
568		90		10	0.90298
633	88			11	0.923564
634			11	88	0.923564
753		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain