SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene19506

Length: 1657 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene19506

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Vacuolar protein sorting factor 4B-like n=4 Tax=Poaceae RepID=Q5QMP6_ORYSJ	-	-	0.0	69%
FL-Next	tr=Katanin p60 ATPase-containing subunit, putative; Ricinus communis (Castor bean).	-	-	0.0	69%
Sma3	Putative uncharacterized protein At2g45500	-	-	3.608e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Microtubule-severing ATPase.	EC:3.6.4.3	-	1.435e-28	-

Source	Gene names
Sma3	AAA1; AT1G64110; AT2G34560; AT4g02470; AT4g24850; AT4g27680; AT4g28000; At1g02890; At1g64110; At1g64110/F22C12.12; At1g80350; At2g27600; At2g34560; At2g45500; At3g27130; At4g02470; At4g02480; At4g24850; At4g27680; At4g28000; At5g52882; At5g53540; B1103G11

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	multivesicular body	GO:0005771	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	ATP-dependent peptidase activity	GO:0004176	Molecular Function	-
Sma3	aminopeptidase activity	GO:0004177	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	thiamine diphosphokinase activity	GO:0004788	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	microtubule-severing ATPase activity	GO:0008568	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	mismatched DNA binding	GO:0030983	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	mismatch repair	GO:0006298	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	thiamine metabolic process	GO:0006772	Biological Process	-
Sma3	endosome organization	GO:0007032	Biological Process	-
Sma3	thiamine diphosphate biosynthetic process	GO:0009229	Biological Process	-
Sma3	multidimensional cell growth	GO:0009825	Biological Process	-
Sma3	plant-type cell wall biogenesis	GO:0009832	Biological Process	-
Sma3	trichome branching	GO:0010091	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-
Sma3	cortical microtubule organization	GO:0043622	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	-
Sma3	Peptidase M18	IPR001948	-	-
Sma3		IPR001984	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Thiamin pyrophosphokinase	IPR006282	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	-
Sma3	MIT	IPR007330	-	-
Sma3	Thiamin pyrophosphokinase, catalytic domain	IPR007371	-	-
Sma3	Thiamin pyrophosphokinase, vitamin B1-binding domain	IPR007373	-	-
Sma3	DNA mismatch repair protein, C-terminal	IPR013507	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	MutL, C-terminal, dimerisation	IPR014790	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3		IPR015706	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G34560.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr2:14560266-14562695 FORWARD LENGTH=393	66%
RefSeq	Arabidopsis thaliana	NP_973600.1	P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002305703.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9S114

Fln msg:

Fln protein: MTDEPAITRWKFEDFEEVYDAKFGVKRENVGTNGHFPVQKVHERFDERTSAVANGNGNNTRSSAGLAVYEQFLRQENSGTEFAGGAAGRLTEKPQKGVFPTFESVEMRNLAESISRDILRGSPDVQWNDIKGLENAKRLLKEAVVMPIKYPKYFRGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEVARHHAPSTIFLDEIDAIISHRGEGRSEHEASRRLKTELLIQMDGLMQTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPDREARQAMFEDLLSSQTGAELPYDLMVERTEGYSGSDIRLVCKEAAMRPLRRLMAVLEENGGAEVPEEELPSVGPITSDDIIVALKITRPSAHLNENRYQKFNDEYGSQATY*

Protein Length: 410

Fln nts: CGTCGTGCCACACTGAATGGCACTCAGACTTTAGCCCGGTGGCCCGAGTTCGAATCGGCGAGGGAGCTCGTCTTCACCATAACACGTGGTTCCCTCACCATTTCCCATAGCT_-_ATGACGGACGAGCCAGCCATTACCAGATGGAAATTCGAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTAAAACGTGAAAACGTGGGCACTAACGGGCATTTTCCGGTGCAAAAAGTTCACGAGCGTTTTGATGAACGTACGAGCGCGGTGGCCAATGGAAATGGCAACAATACAAGAAGCTCGGCGGGTTTGGCCGTCTATGAACAATTTTTACGCCAGGAAAATAGTGGAACAGAGTTTGCTGGTGGGGCTGCAGGGAGATTGACAGAAAAACCGCAGAAAGGAGTGTTTCCAACCTTTGAGTCCGTTGAAATGCGTAACTTGGCAGAAAGTATCAGTCGGGATATTCTTCGAGGGAGTCCTGATGTGCAGTGGAACGACATTAAGGGTCTAGAGAATGCAAAACGACTTTTGAAAGAGGCAGTTGTGATGCCTATTAAGTACCCTAAGTATTTTAGAGGCCTTCTATCGCCTTGGAAAGGGATTCTTCTATTTGGCCCACCTGGAACTGGAAAGACAATGCTTGCCAAGGCAGTGGCTACTGAGTGCAAAACAACATTCTTCAACATATCTGCATCATCCATTGTTAGCAAGTGGCGCGGTGATTCAGAAAAACTTGTAAAAGTACTTTTTGAGGTTGCAAGACATCATGCACCATCAACAATCTTTCTAGATGAAATTGATGCTATTATTAGTCACCGTGGTGAAGGCCGTAGTGAGCACGAAGCAAGTAGACGTTTAAAGACTGAGCTACTTATCCAGATGGATGGTTTAATGCAAACAAATGACCTCGTTTTTGTCCTGGCGGCCACTAATTTGCCGTGGGAGCTGGATGCTGCCATGCTTCGACGTCTTGAAAAGCGTATTCTTGTGCCTCTTCCTGACCGTGAAGCACGTCAAGCCATGTTTGAAGACCTCTTGTCTTCGCAAACTGGTGCTGAGCTACCATACGATCTTATGGTTGAAAGGACAGAAGGCTATTCTGGTTCAGATATTCGTTTAGTTTGCAAAGAAGCTGCTATGCGGCCACTCAGGCGATTAATGGCCGTGCTTGAAGAAAACGGTGGAGCTGAGGTACCAGAAGAAGAACTGCCAAGCGTTGGTCCTATCACAAGTGATGATATTATTGTGGCTCTTAAAATCACAAGGCCATCAGCCCATCTTAATGAAAATCGTTACCAAAAGTTTAATGATGAGTATGGCAGCCAAGCAACATATTGA___TCTTCCTTGCAGAGTTGTCTATGCATGCATAAATGAAAATTATGAAACTAGTGGCGATTCTGAAAATTGAGACCTTTTGTGAGTGATCGTTGATTGTACAGGAGGTATCTTCTTTCATTCATTTGAAGCTATATAGTATATATCCATCTACTCAAGCCCATATTCTATTGGCATTAATAATTAGTAATTTGGTCATGCTGATACTAATGCATTATAATTGAGGGAATTGGTTTTGATTAAATTTTTGGGGAAGAAATACTTTGAGCTGGGTTTATATCCCAAATCTCTTGAAGCCCTGTGCAGATGGCATATACGATA

Fln Alignment:

Contig19506___MTDEPAITRWKFEDFEEVYDAKFGVKRENVGTNGHFPVQKVHERFDERTS-AVANGNGNNTRSSAGLAVYEQFLRQENSGTEFAGGAAGRLTEKPQKGVFPTFESVEMRNLAESISRDILRGSPDVQWNDIKGLENAKRLLKEAVVMPIKYPKYFRGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEVARHHAPSTIFLDEIDAIISHRGEGRSEHEASRRLKTELLIQMDGLMQTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPDREARQAMFEDLLSSQTGAE-LPYDLMVERTEGYSGSDIRLVCKEAAMRPLRRLMAVLXXXXXXXXXXXXLPSVGPITSDDIIVALKITRPSAHLNENRYQKFNDEYGSQ
B9S114_______________MADEPSVTRWSFQDFKLFYDAKFGRKKMSETQNGVAGPAVANGIGNSSTSNATSNGNGH-VKNTSDMAIYEQYRNQDRSSNHSNGVLPNGIDDRPQKSLLPAFDSAETRALAEGLCRDIVRGNPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFIDEIDAIISQRGEGRSEHEASRRLKTELLIQMDGLTRTEELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRAMYEELLPPQPDEDKLPYDLLVERTEGFSGSDIRLLCKEAAMQPLRRLMALL-EDRQEVVPDDELPKVGPITPEDIETALKNTRPSAHLHAHRYEKFNADYGSQ

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1333	80			20	0.995493
1335	60	20	20		0.99255
1336			20	80	0.995493
1337			20	80	0.995493
1338		20	80		0.995493
1342	20			80	0.995493
1514		25		75	1.0
1530			90	10	0.90298
1532			10	90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain