SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene19430

Length: 1770 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene19430

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	-	-	2.0e-09	15%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	(1-4)-beta-mannan endohydrolase	-	-	1.046e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Mannan endo-1,4-beta-mannosidase.	EC:3.2.1.78	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fructose and mannose metabolism	00051		0.0	%

Source	Gene names
Sma3	At1g02310; At2g20680; At3g10890; At3g10900; At3g30540; At4g28320; At5g01930; At5g66460; F26K10.200; F5H14.35; GSVIVT00010891001; GSVIVT00014580001; GSVIVT00018590001; GSVIVT00024894001; GSVIVT00032044001; GSVIVT00032045001; GSVIVT00032046001; GSVIVT000320

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	mannan endo-1,4-beta-mannosidase activity	GO:0016985	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Glycoside hydrolase, family 5	IPR001547	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G66460.1	MAN7, AtMAN7 Glycosyl hydrolase superfamily protein chr5:26538911-26540837 REVERSE LENGTH=431	56%
RefSeq	Arabidopsis thaliana	NP_201447.1	mannan endo-1,4-beta-mannosidase 7 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002306881.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9Z9

Fln msg:

Fln protein: MAGVMQKSFWVLASLFFLSFLQQASAGGSAFVQTKGTQFSVNGNPLFVNGFNSYWLMTIATDPAQRNKVTSVFEQAAAHGLNVARTWAFNDGQYQGLQTSPGVYDEQVFQALDFVVSEANKYGVRLILSLVNNYVSFGGKAQYVQWARNAGQNLNSEDDFFTDPTVKGYYKNHVKTVLTRVNSITGVAYKDDSTIFAWELINEPRCESDPSGRTIQGWIEEMASHVKSIDGNHLLEAGLEGFYGESKEDINPGFSVGTDFITNNQITGIDFATVHCYPDIWLAGSDEEGQLSFVQTWLENHLEDGSNTLKKPLLLAEFGKSSKDSGFSMGDRDSLFDLIYKQIYASASREGAGGGALFWQLLAEGMSSYGDGYEVVLSQNPSTAALISGQSNKLDRLTRLFARMDADEKKTQVHAHRRAGWHSKSING*

Protein Length: 430

Fln nts: CGTCGTGACCTTGGCTGTCACGCAGGGGAAGTTCTTCATTGTTGGGAGACCTGCTCACCAATGCAGAGATTATCATTTGAGTAGTTTCTGATTCTAAATCTGGGAATGTACATTTTTTCCTGAGGTCTGTTAAGAGTTTTTTTTAGTCAA_-_ATGGCTGGTGTTATGCAGAAGAGCTTTTGGGTTCTTGCTTCCCTCTTCTTTCTTAGTTTTCTTCAGCAAGCTTCAGCAGGAGGAAGTGCATTTGTGCAGACAAAAGGCACCCAATTTTCTGTTAATGGGAACCCTCTGTTTGTCAATGGGTTCAACTCTTACTGGCTAATGACTATAGCAACAGATCCAGCACAGAGAAATAAGGTCACCTCTGTTTTTGAACAAGCTGCAGCTCATGGGCTCAATGTTGCCAGGACTTGGGCCTTCAATGATGGCCAGTACCAGGGATTGCAGACTTCTCCTGGTGTATATGATGAACAAGTCTTTCAGGCCCTGGACTTTGTGGTCTCTGAGGCCAACAAGTATGGTGTCAGATTAATACTTAGCCTGGTGAACAATTATGTGAGTTTTGGAGGAAAGGCCCAATATGTACAATGGGCTCGCAATGCTGGACAGAATCTCAACTCTGAAGATGATTTCTTCACAGATCCCACTGTTAAAGGCTACTATAAGAACCATGTAAAGACTGTATTAACAAGAGTGAACAGCATTACTGGAGTAGCCTACAAGGATGACTCTACAATCTTTGCATGGGAGCTCATAAACGAGCCTCGTTGTGAGAGTGATCCCTCTGGGAGGACCATCCAGGGATGGATAGAGGAGATGGCCAGCCATGTCAAATCCATTGATGGAAACCATCTTTTGGAGGCTGGCTTGGAAGGGTTTTATGGAGAGTCCAAGGAAGACATCAATCCAGGCTTTTCTGTGGGTACAGATTTCATCACCAACAACCAAATCACAGGAATTGATTTTGCAACTGTACATTGCTATCCTGACATCTGGCTTGCTGGATCAGATGAGGAGGGTCAGCTTTCATTTGTGCAGACTTGGTTAGAGAACCATCTGGAAGATGGAAGCAACACATTGAAAAAGCCACTTCTGTTGGCAGAGTTTGGGAAATCTTCCAAAGACTCAGGATTCAGTATGGGTGACAGAGACAGTTTGTTTGATTTGATTTATAAACAGATATATGCTTCTGCTAGCAGGGAAGGAGCAGGTGGAGGAGCCCTGTTTTGGCAGCTGTTGGCAGAAGGAATGAGTTCATATGGAGATGGGTATGAGGTTGTCTTGTCTCAGAATCCATCCACAGCTGCTTTAATTTCTGGGCAGTCTAATAAGTTGGACAGGCTCACTCGTCTGTTCGCAAGGATGGATGCAGATGAGAAGAAGACGCAGGTCCATGCACATCGAAGAGCAGGATGGCACAGCAAATCCATCAATGGCTGA___TTTCGATATACACAATTTGGACTTGTATATCTCTGGTATGTATGTTATGGGAAAAATCTGTCATAAAAAAATCTTCAAGCATCCCGCTCGACTTTCTGGGTAATCGAGCGGGGAGGTACTGTGGACTTTCACCACCTCGGAAACAAGAAAGGGAAAAGAAAGAATAAATGGAGAGGGTATAGGTAGTATGGGTATTTTAATTAAACGGGACTGCATGACTCATCCAATTTTAAGTATATATAATGTCCTTTAATGTAAATATATATGTGTAATTTTGATCGAGCATTTGATCTGGAGAGTGGATTTTCTGAAGTTTTGATTTTATAATGATGT

Fln Alignment:

Contig19430___AFVQTKGTQFSVNGNPLFVNGFNSYWLMTIATDPAQRNKVTSVFEQAAAHGLNVARTWAFNDGQYQGLQTSPGVYDEQVFQALDFVVSEANKYGVRLILSLVNNYVSFGGKAQYVQWARNAGQNL-NSEDDFFTDPTVKGYYKNHVKTVLTRVNSITGVAYKDDSTIFAWELINEPRCESDPSGRTIQGWIEEMASHVKSIDGNHLLEAGLEGFYGE---SKEDINPG---FSVGTDFITNNQITGIDFATVHCYPDIWLAGSDEEGQLSFVQTWLENHLEDGSNTLKKPLLLAEFGKSSKDSGFSMGDRDSLFDLIYKQIYXXXXXXXXXXXXLFWQLLAEGMSSYGDGYEVVLSQNPSTAALISGQSNKLDRL
D5A9Z9_______________SFVERNGSHFVVDDKELYVNGWNSYWLMDQSVGDSTRHRVKTMLRRGAEMGLTVVRTWAFNDGGYNALQQFPGTFDERVLRALDFVIVEARRNGLRLIFSLVNNLNAYGGKVQYVEWAHAAGINVGSSNDSFFSDPTIRGYYKEYVKSILVRKNSISGVEYRNEPAIFAWELVNEPRCTSDASGQTLQTWISEMAKFIKSLDSRHLLTVGLEGFYGKTTPNKIELNPGDWAVSLGSDFIWNSQVEEIDFASVHAYPDSWIPNVDLEDHLNYFSKWVTSHIDDGEQILKKPVLFTEFGLSSHHKGFEQSHRDRLFKTMYEEIDESARKGGAGGGALIWQFVVEGMEEYGDEFAFVPWQFPSTHKLIVEQSCRLQTL

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
22			25	75	0.996473
24	75		25		0.996473
26	33		33		0.997753
212		50		50	1.0
403		75		25	0.996473
406	33		66		0.997452
473	25		75		0.996473
475		75	25		0.996473
482			50	50	1.0
483		75		25	0.996473
485		33		66	0.997452
626	25		75		0.996473
629			25	75	0.996473
693	20		80		0.995493
744	25	75			0.996473
954		83		16	0.994512
955	83		16		0.994512
1035			16	83	0.994512
1063	66		33		1.0
1074	66		33		1.0
1121	83	16			0.994512
1127		33		66	1.0
1363	40		60		1.0
1426		80	20		0.995493
1482	60	40			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain