SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene19174

Length: 507 nt

UniGene Fasta

>sp_v3.0_unigene19174
CGTCGTGACCTTGGTGTCCTTGTGTTTCTCTGGAAAAGCGTATTTCGGAGGAGATGGGATCGGTTTTGTTGACATCGCATTGGGTGGTCTGCTCGCATTTGTCAATACCCTGGAGAAGATTACTGATTCAGTTTTGATAGACGCAGAGAAGATGCCGCTGTTAAGCGCATGGATGGATCGATTCTGTGAGGCAGATGGAGTGAAAGAAGTTATGCCGGACCCGGTCAAGCTGCAGGAATTTATGTGCGCCACGAGAGTTAAATTTGCGTCCCTACCTGCTGCCAATTAGGGGAAGTCATTCCGCCATTAAATTTAGATAGATACTCAACAGAAGAACGTATTTAAATGGATATTATCCTCACATTGTTTTTAATTTTATGTTGTCAGTTTGACTGATTGTAGGCTTTTTGAATCTTTGGTGAACTATCAGTTTTCACTTTCTTCCATGTACTTTGACTTCAGGGGGAAAGCAAAAATTGCAGAAATGCCGTCTGACGAACTTTCCTT

Ace file of the UniGene sp_v3.0_unigene19174

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable glutathione S-transferase n=1 Tax=Picea mariana RepID=O65056_PICMA	-	-	3.0e-33	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Tau class glutathione S-transferase	-	-	7.284e-09	-

Source	Gene names
Sma3	Sb18; Sb52;

Source	GOs	Term	Type	e value	Identity
Sma3	transferase activity	GO:0016740	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G10370.1	GST30, ATGSTU17, GST30B, ERD9 Glutathione S-transferase family protein chr1:3397274-3398273 REVERSE LENGTH=227	3.0e-15	45%
RefSeq	Arabidopsis thaliana	NP_172508.4	glutathione S-transferase [Arabidopsis thaliana]	3.0e-15	45%
RefSeq	Populus trichocarpa	XP_002311870.1	predicted protein [Populus trichocarpa]	1.0e-14	45%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB46

Fln msg: your sequence is shorter than subject: 96 - 236

Fln protein: VVTLVSLCFSGKAYFGGDGIGFVDIALGGLLAFVNTLEKITDSVLIDAEKMPLLSAWMDRFCEADGVKEVMPDPVKLQEFMCATRVKFASLPAAN*

Protein Length: 97

Fln nts: CGTCGTGACCTTGGTGTCCTTGTGTTTCTCTGGAAAAGCGTATTTCGGAGGAGATGGGATCGGTTTTGTTGACATCGCATTGGGTGGTCTGCTCGCATTTGTCAATACCCTGGAGAAGATTACTGATTCAGTTTTGATAGACGCAGAGAAGATGCCGCTGTTAAGCGCATGGATGGATCGATTCTGTGAGGCAGATGGAGTGAAAGAAGTTATGCCGGACCCGGTCAAGCTGCAGGAATTTATGTGCGCCACGAGAGTTAAATTTGCGTCCCTACCTGCTGCCAATTAG___GGGAAGTCATTCCGCCATTAAATTTAGATAGATACTCAACAGAAGAACGTATTTAAATGGATATTATCCTCACATTGTTTTTAATTTTATGTTGTCAGTTTGACTGATTGTAGGCTTTTTGAATCTTTGGTGAACTATCAGTTTTCACTTTCTTCCATGTACTTTGACTTCAGGGGGAAAGCAAAAATTGCAGAAATGCCGTCTGACGAACTTTCCTT

Fln Alignment:

Contig19174___SLCFSGKAYFGGDGIGFVDIALGGLLAFVNTLEKITDSVLIDAEKMPLLSAWMDRFCEADGVKEVMPDPVKLQEFMCATRVKFASLPAAN
D5AB46_______________SLCFSGKPYFGGDEIGFVDIALGGMLTFVKTLEKATNSVLIDVEKMPLLSAWMDRFCKADGVKEVMPDPAKLLEFMFAMRVKFTTPPAAN

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
35	33		66		0.997452
41	33	66			0.997452
110	60		40		1.0
131		16		83	0.994512
169		83	16		0.994512
237	25			75	0.996473
305		83	16		0.994512
332	16	83			0.994512
333	83	16			0.994512
359		33		66	1.0
413			40	60	1.0
467		50	50		1.0
474	33		66		0.997452
486	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain