SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene19146

Length: 454 nt

UniGene Fasta

>sp_v3.0_unigene19146
ACTTCTTCACCTAATTGCACCACATTCCTGGCAGTATTGTAATTAACTGCTTATCCAAGGTGTCGAACTTCACGAAGCGTATGACCAAAATTTAGCATGGGATGAAATAGTTGATGTGCATCTGGCCAGATTGTCATTTTAAATCTGCATTCATGGATCTGGCGGTTGTAGATAACATACAATGATTTTCCTCTAATGTTTTATCCGTTTGTGTGTCCAGAAACAGAGTTAGCCGCCCGTAGCCTGCAAAAATGCTTATAACAGTGAAGAGTTCACAAATGGTGCGTCCCGCCGCACCGACTCCACAGAGGGATCTTTGGAACTCAAATGTAGACCTTGTGGTTCCGAGAATACATACCGCCAGTGTGTATTTCTATAGGCCCACTGGCAGCCCCGATTCCTTTTCAATGAACATTCTCAGGGATGCGCTTAGTAAACTGCTGGTGCCATTTTA

Ace file of the UniGene sp_v3.0_unigene19146

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Hydroxycinnamoyl-CoA:shikimate hydroxycinnamoyltransferase n=2 Tax=Pinaceae RepID=A6Y879_PINRA	-	-	5.0e-30	97%
FL-Next	tr=Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase; Pinus pinaster (Maritime pine).	-	-	0.0	98%
Sma3	Quinate O-hydroxycinnamoyltransferase/shikimate O-hydroxycinnamoyltransferase	-	-	4.425e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Shikimate O-hydroxycinnamoyltransferase.	EC:2.3.1.133	-	2.445e-11	-

Source	KEGGs	Term	e value	Identity
Sma3	Phenylpropanoid biosynthesis	00940	2.445e-11	%
Sma3	Flavonoid biosynthesis	00941	2.445e-11	%
Sma3	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	2.445e-11	%
Sma3	Biosynthesis of phenylpropanoids	01061	2.445e-11	%
Sma3	Biosynthesis of secondary metabolites	01110	2.445e-11	%

Source	Gene names
Sma3	AsHHT1; AsHHT3; At5g48930; CtSQHCT4; CtSQHCT6; GSVIVT00025189001; HCQ3; HCQ7; HCT; HCT1A; HCT1B; HCTa; HQT; HQTa; OSJNBa0029H02.19; Os04g0500700; OsI_16513; OsI_16514; OsJ_15346; PHYPADRAFT_105011; POPTRDRAFT_554899; POPTRDRAFT_587193; Pm94; RCOM_1442250;

Source	GOs	Term	Type	Identity
Sma3		GO:0008415	Molecular Function	-
Sma3	transferase activity, transferring acyl groups other than amino-acyl groups	GO:0016747	Molecular Function	-
Sma3	shikimate O-hydroxycinnamoyltransferase activity	GO:0047172	Molecular Function	-
Sma3	quinate O-hydroxycinnamoyltransferase activity	GO:0047205	Molecular Function	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	positive regulation of flavonoid biosynthetic process	GO:0009963	Biological Process	-
Sma3	auxin homeostasis	GO:0010252	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transferase	IPR003480	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G48930.1	HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase chr5:19836654-19838092 REVERSE LENGTH=433	7.0e-22	61%
RefSeq	Arabidopsis thaliana	NP_199704.1	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase [Arabidopsis thaliana]	1.0e-21	61%
RefSeq	Populus trichocarpa	XP_002332068.1	hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase [Populus trichocarpa]	1.0e-24	68%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: G3C905

Fln msg: Distance to subject end: 365 aas, your sequence is shorter than subject: 67 - 433

Fln protein: MLITVKSSQMVRPAAPTPQRDLWNSNVDLVVPRIHTASVYFYRPTGSPDSFSMNILRDALSKLLVPF

Protein Length: 68

Fln nts: ACTTCTTCACCTAATTGCACCACATTCCTGGCAGTATTGTAATTAACTGCTTATCCAAGGTGTCGAACTTCACGAAGCGTATGACCAAAATTTAGCATGGGATGAAATAGTTGATGTGCATCTGGCCAGATTGTCATTTTAAATCTGCATTCATGGATCTGGCGGTTGTAGATAACATACAATGATTTTCCTCTAATGTTTTATCCGTTTGTGTGTCCAGAAACAGAGTTAGCCGCCCGTAGCCTGCAAAA_-_ATGCTTATAACAGTGAAGAGTTCACAAATGGTGCGTCCCGCCGCACCGACTCCACAGAGGGATCTTTGGAACTCAAATGTAGACCTTGTGGTTCCGAGAATACATACCGCCAGTGTGTATTTCTATAGGCCCACTGGCAGCCCCGATTCCTTTTCAATGAACATTCTCAGGGATGCGCTTAGTAAACTGCTGGTGCCATTTTA

Fln Alignment:

Contig19146___MLITVKSSQMVRPAAPTPQRDLWNSNVDLVVPRIHTASVYFYRPTGSPDSFSMNILRDALSKLLVPF
G3C905_______________MLITVKSSQMVRPAAPTPQRDLWNSNVDLVVPRIHTASVYFYRPTGSPDFFSMNILRDALSKLLVPF

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
28		75	25		0.996473
30		25	75		0.996473
32		75		25	0.996473
33	75		25		0.996473
34	25		75		0.996473
35		25		75	0.996473
36	75	25			0.996473
40			25	75	0.996473
41	75	25			0.996473
42	75			25	0.996473
43			25	75	0.996473
45	75	25			0.996473
49		25	75		0.996473
195		20		80	0.995493
200		20		80	0.995493
202		20		80	0.995493
203		20		80	0.995493
204	80		20		0.995493
207		80		20	0.995493
208			80	20	0.995493
212	20		80		0.995493
213	20			80	0.995493
217			80	20	0.995493
219	20	80			0.995493
221	80			20	0.995493
222			80	20	0.995493
399	20		80		0.995493
403		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain