SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene19141

Length: 373 nt

UniGene Fasta

>sp_v3.0_unigene19141
CGTCGTGACCTTGGCTGACACTCGAGTCCGCGCAATATCGTCGGGGGAAATTAGAGTTTTTACCTCTAAATCCTCAGATCCTGGAGAGCTCTCAAGGTAAGGGAAGATCGAGCAATGACGGGGGTTTTGTAAGTGCGATTCAAAATTTTCATCTGTCCTTTAATTCTTTGCGGCGATCGACTGAGAACATTCTGGAATTATCGGGATCTTTAAAATGGTGGTTCTTGCAGCATCCATCATTACCAAAACAGGGAAAGCTCTGGTATCTAGGCAGTTTGTTGACATGTCAAGAATCAGGATTGAAGGATTGCTTGCAGCTTTCCCTAAATTGGTTGGCATTGGAAAACAACATACATATGTAGAGACAGAAAAT

Ace file of the UniGene sp_v3.0_unigene19141

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Coatomer subunit delta-1 n=8 Tax=Poaceae RepID=COPD1_ORYSJ	-	-	2.0e-19	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	Delta-COP	-	-	5.891e-09	-

Source	Gene names
Sma3	AT5G05010; At5g05010; CHLREDRAFT_195439; COP5; COPD1; COPdelta; GSVIVT00030145001; LOC_Os01g61710; LOC_Os05g24594; MICPUCDRAFT_50135; MICPUN_60209; OSTLU_94212; Os01g0833700; Os05g0310800; Os05g0311000; OsI_04321; OsI_19411; OsJ_03976; OsJ_18003; OsJ_2708

Source	GOs	Term	Type	Identity
Sma3	Golgi membrane	GO:0000139	Cellular Component	-
Sma3	clathrin adaptor complex	GO:0030131	Cellular Component	-
Sma3	cytoplasmic vesicle	GO:0031410	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	UPF0103/Mediator of ErbB2-driven cell motility (Memo-related)	IPR002737	-	0.0	-
Sma3	Clathrin adaptor, mu subunit, C-terminal	IPR008968	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G05010.1	clathrin adaptor complexes medium subunit family protein chr5:1477137-1479872 FORWARD LENGTH=527	5.0e-22	81%
RefSeq	Arabidopsis thaliana	NP_001031836.1	coatomer subunit delta [Arabidopsis thaliana]	6.0e-22	81%
RefSeq	Populus trichocarpa	XP_002318291.1	predicted protein [Populus trichocarpa]	4.0e-24	90%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9J3

Fln msg: Distance to subject end: 476 aas, your sequence is shorter than subject: 53 - 529

Fln protein: MVVLAASIITKTGKALVSRQFVDMSRIRIEGLLAAFPKLVGIGKQHTYVETEN

Protein Length: 54

Fln nts: CGTCGTGACCTTGGCTGACACTCGAGTCCGCGCAATATCGTCGGGGGAAATTAGAGTTTTTACCTCTAAATCCTCAGATCCTGGAGAGCTCTCAAGGTAAGGGAAGATCGAGCAATGACGGGGGTTTTGTAAGTGCGATTCAAAATTTTCATCTGTCCTTTAATTCTTTGCGGCGATCGACTGAGAACATTCTGGAATTATCGGGATCTTTAAA_-_ATGGTGGTTCTTGCAGCATCCATCATTACCAAAACAGGGAAAGCTCTGGTATCTAGGCAGTTTGTTGACATGTCAAGAATCAGGATTGAAGGATTGCTTGCAGCTTTCCCTAAATTGGTTGGCATTGGAAAACAACATACATATGTAGAGACAGAAAAT

Fln Alignment:

Contig19141___MVVLAASIITKTGKALVSRQFVDMSRIRIEGLLAAFPKLVGIGKQHTYVETEN
D5A9J3_______________MVVLAASIITKTGKALVSRQFVDMSRIRIEGLLAAFPKLVGIGKQHTYVETEN

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
105	85		14		0.993533
146	71		28		1.0
260		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain