SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene19009

Length: 405 nt

UniGene Fasta

>sp_v3.0_unigene19009
AGCGAACGTTCGGTGGATGCAGGGCCTCTATGGTGAAGCTCTACGAACTCATGAAAAGAAGGGGCGACAAGATCCCAGCACTATTGAAGAATGGAGAAATGCACTCCGTCAAGTTGCAGACAAGAGCGGGTTCGAGCTGCAGAAGGACAATGATGGCGAGGATTTGGTTCTGGAACTGCTCGATGAGGTGGTTGAAAGTGTGTTGGAAAGGATGCCAAAGCCAGATTTGCACGTGGCGGAGTATCCAACAGGCCTCGATGACAAACTGAAAGATTTTGAAGATACAGTCCAGTTGACGCAACAACAGGGCCGAAAACCCCAGATCTTAGGGATTGTAGGGTTAGGTAGTGTGGGAAAGACAACACTTGCGACATCATTCTTCAATAAGAAGAAATCAGATTATGA

Ace file of the UniGene sp_v3.0_unigene19009

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIR/P-loop/LRR n=1 Tax=Pinus taeda RepID=Q8L8J0_PINTA	-	-	2.0e-23	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMX8

Fln msg: Distance to subject end: 407 aas, your sequence is shorter than subject: 134 - 653

Fln protein: ANVRWMQGLYGEALRTHEKKGRQDPSTIEEWRNALRQVADKSGFELQKDNDGEDLVLELLDEVVESVLERMPKPDLHVAEYPTGLDDKLKDFEDTVQLTQQQGRKPQILGIVGLGSVGKTTLATSFFNKKKSDY

Protein Length: 135

Fln nts: AGCGAACGTTCGGTGGATGCAGGGCCTCTATGGTGAAGCTCTACGAACTCATGAAAAGAAGGGGCGACAAGATCCCAGCACTATTGAAGAATGGAGAAATGCACTCCGTCAAGTTGCAGACAAGAGCGGGTTCGAGCTGCAGAAGGACAATGATGGCGAGGATTTGGTTCTGGAACTGCTCGATGAGGTGGTTGAAAGTGTGTTGGAAAGGATGCCAAAGCCAGATTTGCACGTGGCGGAGTATCCAACAGGCCTCGATGACAAACTGAAAGATTTTGAAGATACAGTCCAGTTGACGCAACAACAGGGCCGAAAACCCCAGATCTTAGGGATTGTAGGGTTAGGTAGTGTGGGAAAGACAACACTTGCGACATCATTCTTCAATAAGAAGAAATCAGATTATGA

Fln Alignment:

Contig19009___ANVRWMQGLYGEALRTHEKKGRQDPSTIEEWRNALRQVADKSGFELQKDNDGXXXXXXXXXXXXXXXXXRMPKPDLHVAEYPTGLDDKLKDFEDTVQLTQQQGRKPQILGIVGLGSVGKTTLATSFFNKKKSDY
B8LMX8_______________AEVRWMLGLYGEYLQSHETKGRYDPNTIKKWRNALHQVASSSGFELETCN-GEELVLELLDKVVKCLSEIMIKPDLYVAEYPTGLDCKLKDFEDTVLLQQQQSGEPQLLGIVGLGGVGKTTMAKELFNRKKTDY

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
163	50			50	1.0
167			50	25	0.995533
169			50	50	1.0
190	25		75		0.996473
197	66			33	0.997452
212	66		33		0.997452
230		66		33	0.997452
238			66	33	0.997452
253		66		33	0.997452
259		16		83	0.994512
306	80			20	0.995493
347	66		33		0.997452
349		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain