SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18920

Length: 2230 nt

UniGene Fasta

>sp_v3.0_unigene18920
CGTCGTGACCTTGGCTGTCACTCAGTATTGATGTGGGCACTCACATAGGTGGCTGTGATCAGTTTTGAGATACATCAAGTTGACGGGATCGTCCCTAATGGATCTGGCAATGCCAGGCTTTTGTCATGGAGGTTGGCTGTGCCAATAGTAACATTGGGCCTAAGCTTTTACAGAATTCAGTGATTAGATCTGCAGGGCATAGTACTTTTGGGCATGAAATGAGCTTTTACTGCTCTCGGGGAAGGAGGTCAATGAAGAGGATAGATGGCCCTGAAGAACAATTTTATGCAATTTACAGAAGATGTTTGTTAAGGAAATTTGTTCTTACTTCTCATTTCTTCCTGTGGATCGTTGCAGCTCTTATCAATATGAAGCAGGTGGCAATCATAAGTGATTTGGTCCTGTAGAAAAATAGGAATATAACTATATCTGAGCATATATATATTAAAAATGAGGCGGAGAGCTACAGATTTCAGGCGCCCGGCGCGGAGGCGTCTGTCCAGAGGATTTTGGGCAGCTCTTGGAGGCTTTTTATTCATATTGTTTATGTTTCTTTTCGGTCATGAGAGGCAGCCAAGTCCTGATGTTTTCCATCACGAGGAGGTTGAAATTACAAGACGGAGTGTGACAGCGGGAATGAATTTCACAGAAGAGATGATAAGTGCCAATTCTATTACAAGGCAGTTGGGAGATCAGATGACACTGGCTAAAGCATATGTTGTAATTGCGAAGGAAAATAACAATTTGCAATTTGCATGGGAATTGAGTTCCCATATTAGGGATTGTCAGTTACTTCTATCTAAAGCAGCTACAAGAGGAAGCCCGATTACAATGCAGGAGGCAGAGGCTACCATACGAGAATTAGCAGGATTAATCTATCATGCAAAAGAGTTACATTATGACAGTGCAACTATGATCATGAAACTGAAAGCTCAGATACAAGCATTGGAAGATCGTGCAAATGCAGCCAATGTACAGAGCACAACGTTTGGACAATTAGCTGCAGAGGCAACTCCTAAGAACCTTTACTGTTTGGGTATAAGGTTGACATTGGAATGGATGAAGCATCCTAAGCTCCGGAAGTCTATGGAGGAGAAGAAGAATTCCCTAAGGTTCACAGATATTAATTTGTATCACTTTTGTGTCTTCTCAGATAATGTGCTTGCAACGTCTGTTGTGGTGAACTCTACAACATACCATGCTGATCATCCTGAGCTGCTTGTCTTCCACATAGTCACGGATGGAGTGAATTTTGGAGCCATGCGGGCATGGTTTGCTATGAATCATTACAAGGGGGCAGCTATAGAAGTACAAAATGTGGATGACTTGGCATGGCTAAATGCATCATATGCCCCTGTCCTGAAGCAGCTGCAAGATGCTGAAACACAAAAGTACTACTTCACAGGTGCCCAGGATAGCAAAAGTGCAATTAAATTTCATAACCCCAAGTACCTTTCTATTTTGAACCACCTCAGATTCTACATTCCTGAAATATATCCTGCACTCGAGAAAGTCGTGTTTCTGGATGATGATGTGGTGGTTCAGAAAGACTTGATGCCACTATTCTCTATAAATTTGCACGGAAATGTGAATGGGGCAGTGGAAACCTGCCTTGAGACTTTTCATCGATACCACAAGTATCTAAATTTTTCTCACCCCAAGATTCAGTCTCATTTTGATCCTGATGCATGTGGATGGGCCTTTGGGATGAATATCTTTGATCTCATAGCATGGAAGAAAGCTAATGTTACCAGTCGGTATCACTACTGGCAGGAACAAAATGTAGACCGCACACTCTGGAAACTGGGAACTTTGCCTCCAGGCCTACTTACATTTTATGGTTTAACTGAACCTCTTGACAGGCGGTGGCATGCACTAGGTTTAGGATATGATCCCAATGTTGATAACCAACTAATTGAGAGTGCAGCAGTTTTGCATTATAATGGGAATTTGAAGCCCTGGCTGAAGTTGGCAATTACCAGGTATAAACCTCTATGGGAAAAGTATGTGAATTACTCCAACCCATTGTTGGAGCAGTGCAATATCCGTTAATATTGGTCTTGTGTTTCTCCTTCTTGATGCTATCTCAATTGTTATTGTGCCAGTCACTGTTATTGTGCCGGTGTTTTAATAATATTCTTTTTGCCTTTGCAATCTTTTTGGGACATTAATTAATGTTATTCGGATGACATTCTTTAAACGAAATTCAATTCTTTTCTAGAAAAAGTTC

Ace file of the UniGene sp_v3.0_unigene18920

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycosyltransferase, CAZy family GT8 n=2 Tax=Selaginella moellendorffii RepID=D8RE39_SELML	-	-	0.0	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	23%
Sma3	Glycosyltransferase QUASIMODO1, putative	-	-	1.177e-23	-

Source	Gene names
Sma3	AT4g38270; At1g18580; At1g18580/F25I16.8; At2g20807; At2g20810; At2g46480; At3g02350; At3g25140; At3g61130; At4g38270; At5g47780; B1142B04.29; F11A12.4; F11A12_103; F22I13.40; F25I16.8; GSVIVT00000005001; GSVIVT00000008001; GSVIVT00010370001; GSVIVT000118

Source	GOs	Term	Type	Identity
Sma3	Golgi membrane	GO:0000139	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	-
Sma3	polygalacturonate 4-alpha-galacturonosyltransferase activity	GO:0047262	Molecular Function	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	cell adhesion	GO:0007155	Biological Process	-
Sma3	homogalacturonan biosynthetic process	GO:0010289	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glycosyl transferase, family 8	IPR002495	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G18580.1	GAUT11 galacturonosyltransferase 11 chr1:6396144-6398005 FORWARD LENGTH=537	66%
RefSeq	Arabidopsis thaliana	NP_564057.4	alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002330135.1	glycosyltransferase [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYU2

Fln msg: your sequence is longer than subject: 534 - 381

Fln protein: MRRRATDFRRPARRRLSRGFWAALGGFLFILFMFLFGHERQPSPDVFHHEEVEITRRSVTAGMNFTEEMISANSITRQLGDQMTLAKAYVVIAKENNNLQFAWELSSHIRDCQLLLSKAATRGSPITMQEAEATIRELAGLIYHAKELHYDSATMIMKLKAQIQALEDRANAANVQSTTFGQLAAEATPKNLYCLGIRLTLEWMKHPKLRKSMEEKKNSLRFTDINLYHFCVFSDNVLATSVVVNSTTYHADHPELLVFHIVTDGVNFGAMRAWFAMNHYKGAAIEVQNVDDLAWLNASYAPVLKQLQDAETQKYYFTGAQDSKSAIKFHNPKYLSILNHLRFYIPEIYPALEKVVFLDDDVVVQKDLMPLFSINLHGNVNGAVETCLETFHRYHKYLNFSHPKIQSHFDPDACGWAFGMNIFDLIAWKKANVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHALGLGYDPNVDNQLIESAAVLHYNGNLKPWLKLAITRYKPLWEKYVNYSNPLLEQCNIR*

Protein Length: 535

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTATTGATGTGGGCACTCACATAGGTGGCTGTGATCAGTTTTGAGATACATCAAGTTGACGGGATCGTCCCTAATGGATCTGGCAATGCCAGGCTTTTGTCATGGAGGTTGGCTGTGCCAATAGTAACATTGGGCCTAAGCTTTTACAGAATTCAGTGATTAGATCTGCAGGGCATAGTACTTTTGGGCATGAAATGAGCTTTTACTGCTCTCGGGGAAGGAGGTCAATGAAGAGGATAGATGGCCCTGAAGAACAATTTTATGCAATTTACAGAAGATGTTTGTTAAGGAAATTTGTTCTTACTTCTCATTTCTTCCTGTGGATCGTTGCAGCTCTTATCAATATGAAGCAGGTGGCAATCATAAGTGATTTGGTCCTGTAGAAAAATAGGAATATAACTATATCTGAGCATATATATATTAAAA_-_ATGAGGCGGAGAGCTACAGATTTCAGGCGCCCGGCGCGGAGGCGTCTGTCCAGAGGATTTTGGGCAGCTCTTGGAGGCTTTTTATTCATATTGTTTATGTTTCTTTTCGGTCATGAGAGGCAGCCAAGTCCTGATGTTTTCCATCACGAGGAGGTTGAAATTACAAGACGGAGTGTGACAGCGGGAATGAATTTCACAGAAGAGATGATAAGTGCCAATTCTATTACAAGGCAGTTGGGAGATCAGATGACACTGGCTAAAGCATATGTTGTAATTGCGAAGGAAAATAACAATTTGCAATTTGCATGGGAATTGAGTTCCCATATTAGGGATTGTCAGTTACTTCTATCTAAAGCAGCTACAAGAGGAAGCCCGATTACAATGCAGGAGGCAGAGGCTACCATACGAGAATTAGCAGGATTAATCTATCATGCAAAAGAGTTACATTATGACAGTGCAACTATGATCATGAAACTGAAAGCTCAGATACAAGCATTGGAAGATCGTGCAAATGCAGCCAATGTACAGAGCACAACGTTTGGACAATTAGCTGCAGAGGCAACTCCTAAGAACCTTTACTGTTTGGGTATAAGGTTGACATTGGAATGGATGAAGCATCCTAAGCTCCGGAAGTCTATGGAGGAGAAGAAGAATTCCCTAAGGTTCACAGATATTAATTTGTATCACTTTTGTGTCTTCTCAGATAATGTGCTTGCAACGTCTGTTGTGGTGAACTCTACAACATACCATGCTGATCATCCTGAGCTGCTTGTCTTCCACATAGTCACGGATGGAGTGAATTTTGGAGCCATGCGGGCATGGTTTGCTATGAATCATTACAAGGGGGCAGCTATAGAAGTACAAAATGTGGATGACTTGGCATGGCTAAATGCATCATATGCCCCTGTCCTGAAGCAGCTGCAAGATGCTGAAACACAAAAGTACTACTTCACAGGTGCCCAGGATAGCAAAAGTGCAATTAAATTTCATAACCCCAAGTACCTTTCTATTTTGAACCACCTCAGATTCTACATTCCTGAAATATATCCTGCACTCGAGAAAGTCGTGTTTCTGGATGATGATGTGGTGGTTCAGAAAGACTTGATGCCACTATTCTCTATAAATTTGCACGGAAATGTGAATGGGGCAGTGGAAACCTGCCTTGAGACTTTTCATCGATACCACAAGTATCTAAATTTTTCTCACCCCAAGATTCAGTCTCATTTTGATCCTGATGCATGTGGATGGGCCTTTGGGATGAATATCTTTGATCTCATAGCATGGAAGAAAGCTAATGTTACCAGTCGGTATCACTACTGGCAGGAACAAAATGTAGACCGCACACTCTGGAAACTGGGAACTTTGCCTCCAGGCCTACTTACATTTTATGGTTTAACTGAACCTCTTGACAGGCGGTGGCATGCACTAGGTTTAGGATATGATCCCAATGTTGATAACCAACTAATTGAGAGTGCAGCAGTTTTGCATTATAATGGGAATTTGAAGCCCTGGCTGAAGTTGGCAATTACCAGGTATAAACCTCTATGGGAAAAGTATGTGAATTACTCCAACCCATTGTTGGAGCAGTGCAATATCCGTTAA___TATTGGTCTTGTGTTTCTCCTTCTTGATGCTATCTCAATTGTTATTGTGCCAGTCACTGTTATTGTGCCGGTGTTTTAATAATATTCTTTTTGCCTTTGCAATCTTTTTGGGACATTAATTAATGTTATTCGGATGACATTCTTTAAACGAAATTCAATTCTTTTCTAGAAAAAGTTC

Fln Alignment:

Contig18920___QKYYFTGAQDSKSAIKFHNPKYLSILNHLRFYIPEIYPALEKVVFLDDDVVVQKDLMPLFSINLHGNVNGAVETCLETFHRYHKYLN--FSHPKI-QSHFDPDACGWAFGM-----------NIFDLIAWKKANVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHALGLGYDPNVDNQLIESAAVLHYNGNLKPWLKLA----ITRYKPLWEKYVN
A9NYU2_______________EKAFASGGEDSKSDFPYFLP----------FYIPKIYQNLRRFIYAVPDIIVKGKVEELFQVNLTNSPVAAVEDCSHNF----EYINAKSSRPWVAQTPYAKNTCILDHSVLLVNVELLAKENFMEVTKWKKLFHTGGRNDQSDQAI-------------MLALNGNYTKLDASWNSRESRFS-GIDSDV----KIFHFDGEKKPWLKQAEGRRHTNMTKIWWDYLS

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
259	16		83		0.994512
744		80		20	0.995493
770	16		83		0.994512
771	16			83	0.994512
773		83	16		0.994512
774		83		16	0.994512
860	12		87		0.992554
879	12	87			0.992554
932	83	16			0.994512
935		83		16	0.994512
1459	14			85	0.993533
1465		16		83	0.994512
1466	16			83	0.994512
1479	20	40		20	0.994159
1521		80		20	0.995493
1613	16	83			0.994512
1614	16	83			0.994512
1617		83		16	0.994512
1655		25		75	0.996473
1656			25	75	0.996473
1661		75	25		0.996473
1666		75		25	0.996473
1667	75			25	0.996473
1668	75		25		0.996473
1670	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain