SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18640

Length: 1358 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18640

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxisomal biogenesis factor 11 [Medicago truncatula]	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	peroxisomal membrane	GO:0005778	Cellular Component	0.0	-
Sma3	peroxisome fission	GO:0016559	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peroxisomal biogenesis factor 11	IPR008733	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G01820.1	PEX11C peroxin 11c chr1:296213-297723 REVERSE LENGTH=235	74%
RefSeq	Arabidopsis thaliana	NP_563636.1	peroxisomal membrane protein 11C [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002301325.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZS9

Fln msg:

Fln protein: MGSLDATRAELALLVLYLNKAEARDKICRAIQYGSKFLSNGEPGTAQNVDKSTSLARKVFRLFKFVNDLHALLTPLPKSTPLPLVLLGKSKNALLSTFLALDQVVWAGRTGIYKNKERVDLISRISLYCWLSSSVCTTLIEISELGRLTVSIRKLEKALNQATNSEGNLNEQYISKLKQSNNRLLSLVKSAMDVVVAVGLLQLAPKKVTPRVTGAFGFVSSLISCYQLLPPPSKAKAQ*

Protein Length: 240

Fln nts: TTTTTTTACATTTGTATTTTCGATGGTAAGGCCTGAATCGGACAAAGCAGATATGTAAGAGCCGCTAAATGCTATATAAAACTGATAAGGCTTAGATATCTCCTGACACGGCCGCTAAATTCTATATAAAACTGATTTCAATTGCATACCATGTGTTCTCCATGAGAGCGTAGATCCCTCAACCTCTTCAGGGTGAAGATTGTTCGTCTGTTTTGGGGCAAAACGCCTGTTGCCATTTGGATATTAGTTCACAGCTGTGACTAGGCACAGAAGTACCAAAGTG_-_ATGGGTTCGTTAGATGCAACCAGAGCAGAACTTGCTCTCCTTGTCTTGTATTTGAACAAAGCAGAAGCCAGAGATAAAATCTGTAGAGCTATTCAATATGGCTCAAAGTTCCTCAGCAATGGTGAGCCTGGCACAGCACAAAATGTTGACAAGTCCACAAGTTTGGCACGAAAAGTTTTTCGACTTTTCAAGTTCGTGAACGATCTACATGCTCTTCTTACACCACTGCCAAAGTCAACTCCACTTCCTCTTGTTTTGCTTGGGAAGTCCAAAAATGCTCTGCTGTCAACTTTTCTGGCATTGGATCAAGTTGTCTGGGCAGGAAGAACTGGTATCTACAAGAACAAAGAGCGTGTTGACCTTATTTCCAGGATCTCACTTTACTGCTGGTTGAGTTCTTCCGTGTGCACAACTTTGATAGAGATCTCAGAGCTTGGGCGATTAACTGTATCTATAAGAAAGCTAGAGAAAGCGCTGAACCAAGCTACAAACAGTGAAGGAAATTTAAATGAGCAATACATTTCCAAACTCAAGCAGTCAAATAATAGGCTGTTAAGCTTGGTTAAGTCAGCAATGGATGTTGTAGTTGCCGTAGGGCTACTTCAGTTGGCACCAAAGAAAGTCACGCCACGTGTTACCGGAGCCTTTGGTTTCGTATCCTCTCTTATCTCTTGCTATCAGTTGCTGCCTCCACCATCAAAGGCGAAGGCTCAGTAG___ACAAATCGGTGTTGCCTCTTTTTAAAGTCAAGACTGTTATTGTACCTTAGATATATTTATAATTTCTTCTCAGAACATTCGTAGTCTTCTAGGAACCCTGATTGTATATTCTTATGGCTTAAAACAAAATCAGGATAAGATTATATTGGTGTTTTCCTGTAATTAGAAACATATTATTGCTATTTTGTTATAATTGTGGATATGTATTTGCATAGATATCGATGCTCGTGGCTTGCATGCCACATATCTACACCTGTCCTGTAATAGAGTCATTGTATTAATTGAATCGCAAGCTGTTATATTAAACTTGCTGTATATGTGCATTCAAAATAGTTGATATCTCTATGCTTTTTGAAAG

Fln Alignment:

Contig18640___MGSLDATRAELALLVLYLNKAEARDKICRAIQYGSKFLSNGEPGTAQNVDKSTSLARKVFRLFKFVNDLHAXXXXXXXXXXXXXXXXGKSKNALLSTFLALDQVVWAGRTGIYKNKERVDLISRISLYCWLSSSVCTTLIEISELGRLTVSIRKLEKALNQATNSEGNLNEQYISKLKQSNNRLLSLVKSAMDVVVAVGLLQLAPKKVTPRVTGAFGFVSSLISCYQLLPPPSKAKAQ
A9NZS9_______________MGSIDATRAELALLVLYLNKAEARDKICRAIQYGSKFISNGEPGTAQNVDKSTSLARKVFRLFKFVNDLHALLTPLPKSTPLPLVLLGKSKNALLSTFLALDQIVWAGRTGIYKNKERVDLISRISLYCWLSSSVCTTLIEISELGRLTVSIRKLEKALNQATYNEGNLNEQYISKLKQSNNRLLNLVKSSMDVVVAIGLLQLAPKKVTPRVTGAFGFVSSLISCYQLLPPPSKAKAQ

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
101			33	66	1.0
102		66	33		1.0
103		66	33		1.0
104			33	66	1.0
141	84	10	5		0.999846
145		84	10		0.999846
146	84	10		5	0.999846
148	89		10		0.999919
149		89		10	0.999919
153		10	90		0.999898
154	10			85	0.999793
213		10		89	1.0
477		12		87	0.992554
1175	12			87	0.992554
1206	85		14		0.993533
1241		78		21	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain