SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18637

Length: 693 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18637

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PAP fibrillin [Medicago truncatula]	-	-	3.00004e-41	82%
FL-Next	sp=Probable plastid-lipid-associated protein 4, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	41%

Source	Gene names
Sma3	At3g26070; At3g26080; CHLREDRAFT_205881; FIB3; GSVIVT00026573001; GSVIVT00026576001; LOC_Os03g49720; MICPUCDRAFT_18871; MICPUN_72116; MPE11.24; MPE11.25; MtrDRAFT_AC157375g30v1; OSJNBa0004L11.4; OSTLU_29825; Os03g0704100; OsI_13198; OsJ_12270; Ot02g07090;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	plastoglobule	GO:0010287	Cellular Component	-
Sma3	alanine-tRNA ligase activity	GO:0004813	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	alanyl-tRNA aminoacylation	GO:0006419	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Plastid lipid-associated protein/fibrillin conserved domain	IPR006843	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Alanyl-tRNA synthetase, class IIc, N-terminal	IPR018164	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G26070.1	Plastid-lipid associated protein PAP / fibrillin family protein chr3:9526904-9528199 FORWARD LENGTH=242	6.0e-34	61%
RefSeq	Arabidopsis thaliana	NP_189236.3	putative plastid-lipid-associated protein 4 [Arabidopsis thaliana]	7.0e-34	61%
RefSeq	Populus trichocarpa	XP_002303164.1	predicted protein [Populus trichocarpa]	2.00386e-43	79%

Full-Lengther Next Prediction

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
65			75	25	0.996473
66	25			75	0.996473
67	25	75			0.996473
68	25		75		0.996473
69			25	75	0.996473
75		25		75	0.996473
76			75	25	0.996473
77			75	25	0.996473
79	25			75	0.996473
83	75			25	0.996473
89	75	25			0.996473
215		14	14		0.984337
218	14		14		0.984337
219	85			14	0.993533
220	85		14		0.993533
222	85	14			0.993533
223		14		85	0.993533
228	85			14	0.993533
230	85			14	0.993533
233	14			85	0.993533
234		14	85		0.993533
235			85	14	0.993533
237	14	85			0.993533
326			85	14	0.993533
329	14			85	0.993533
330	14			85	0.993533
331	14	85			0.993533
332			14	85	0.993533
333		85	14		0.993533
334		14	85		0.993533
335	14			85	0.993533
336		14	85		0.993533
337		14	85		0.993533
342	85		14		0.993533
345		14	85		0.993533
346			85	14	0.993533
348	85		14		0.993533
398	83		16		0.994512
427	33			66	0.997452
544	80	20			0.995493
577	33		66		1.0
595	16			83	0.994512
597	20	80			0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain