SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18604

Length: 1372 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18604

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Formate dehydrogenase [Arabidopsis thaliana] sp\|Q9S7E4.1\|FDH_ARATH RecName: Full=Formate dehydrogenase, mitochondrial; AltName: Full=NAD-dependent formate dehydrogenase; Short=FDH; Flags: Precursor gb\|AAF19435.1\|AF208028_1 NAD-dependent formate dehydrogen	-	-	0.0	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Formate dehydrogenase	-	-	7.676e-28	-

Source	ECs	Term	Type	e value	Identity
Sma3	Formate dehydrogenase.	EC:1.2.1.2	-	4.988e-35	-

Source	KEGGs	Term	e value	Identity
Sma3	Glyoxylate and dicarboxylate metabolism	00630	4.988e-35	%
Sma3	Methane metabolism	00680	4.988e-35	%
Sma3	Metabolic pathways	01100	4.988e-35	%

Source	Gene names
Sma3	AT5G14780; At5g14780; FDH; FDH1; GSVIVT00020745001; LOC_Os06g29180; LOC_Os06g29220; Os06g0486800; Os06g0486900; OsI_23019; OsI_23021; OsJ_21394; P0008F02.23; P0404G03.13; P0404G03.8; PHYPADRAFT_214795; POPTRDRAFT_824336; RCOM_0850640; T9L3_80; VITISV_0364

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	formate dehydrogenase (NAD+) activity	GO:0008863	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	cofactor binding	GO:0048037	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	IPR006139	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G14780.1	FDH formate dehydrogenase chr5:4777043-4779190 FORWARD LENGTH=384	83%
RefSeq	Arabidopsis thaliana	NP_196982.1	Formate dehydrogenase [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002320501.1	formate dehydrogenase [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV09

Fln msg: Separated hits, possible frame ERROR between 209 and 212, and overlapping frame ERROR between 538 and 535, your sequence is shorter than subject: 300 - 388

Fln protein: MASRRAVISAFRAASRRPICSPVSSIASSVRELxxLEKHIPDVHVLISTPFTQPM*QQRGSRGKELKASFDSWYWF*SH*SKCCSNRWCDCCRSYRSNVVSVAEDELMRILILMRNFMPGDKQIVEGDWKVAAISYRSYDLxxxxIGTIGAGRIGKELHKHLKETGATLETNLDECYLNVMYLSLICLFLTKLGECLTRRKSAS*RRVY*L*IMLEGPSWMLKQSLMLLQVDTLEVTVEMFGFLNLLQKIIHGDPCQTMP*LPISLGLQ*MPR*GMQLERRIC*TNTSREKISLRRIIL*

Protein Length: 301

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTGAATTCGCCATTGCTACCACACTGGCTGACCACCTTCTGAGCTAGATTTCTCTTCTTTGTTCTAGTTGGTGTTTCTAGTC_-_ATGGCGAGCAGGAGAGCTGTTATATCTGCATTTCGAGCTGCGAGTAGAAGGCCAATCTGCTCCCCAGTCTCTTCTATCGCATCGTCTGTCAGAGAATTGCAxxxACTTGAAAAGCACATACCTGATGTGCATGTTTTGATTTCTACGCCTTTCACCCAGCCTATGTGACAGCAGAGAGGATCAAGAGGAAAAGAACTTAAAGCTTCTTTTGACAGCTGGTATTGGTTCTGATCACATTGATCTAAATGCTGCAGCAACCGCTGGTGTGACTGTTGTAGAAGTTACAGGAGTAATGTGGTGTCCGTGGCAGAAGATGAGCTAATGCGCATTCTCATATTGATGCGAAACTTTATGCCTGGAGATAAGCAAATTGTCGAGGGTGATTGGAAAGTGGCAGCAATTTCTTACAGGTCATATGATCTAGAxxxxxxxxxTATTGGTACTATTGGTGCAGGGCGTATTGGCAAAGAACTACATAAGCATTTGAAGGAAACTGGAGCAACATTGGAGACAAATCTTGATGAATGCTACCTAAATGTGATGTACTTGTCATTAATATGCCTCTTTCTGACAAAACTAGGGGAATGTTTAACAAGGAGAAAATCAGCAAGCTGAAGAAGGGTGTATTGATTGTGAATAATGCTCGAGGGGCCATCATGGATGCTCAAGCAGTCGCTGATGCTTCTGCAAGTGGACACATTGGAGGTTACAGTGGAGATGTTTGGTTTCCTCAACCTGCTCCAAAAGATCATCCATGGCGATCCATGCCAAACCATGCCATGACTCCCCATATCTCTGGGACTACAATAGATGCCCAGATAAGGTATGCAGCTGGAACGAAGGATATGCTAGACAAATACTTCAAGGGAGAAGATTTCCCTTCGCAGAATTATATTGTGA___AGGAAGGAAAGCTGGCCAGTCAATACCTATAAAAAAATTCATGTTGGATGCTAAAGCACATGATTCATCATGTTGAATAACAAGCAAGACCCAGAACAGAGCTTGCTTCCCTCCAATAAAACAGTGCAGTGCATCAAATATTGAACTGTCAAATACATTCCTGAGACCAATGATGCTTCAAAGCATTATGCAGGAATGAATGATAAAAGATTAGCATGAAGCTCATTCCATCTGATTTTATAGGTTAGTAGTCTTGAAATAAACTATCTCTAAAATAGAGTGAAGTCAGCGCTTTAGTCCTTTGTGGCTATTGAGGCTTGAAGTTGGCTCACGGATTTAGGTAATGCTATGCATCTTTTCTACTAGC

Fln Alignment:

Contig18604___MASRRAVISAFRAASRRPICSPVSSIASSVRELHxLEKHIPDVHVLISTPFTQP-M*QQRGSRGKELKASFDSWYWF*SH*SKCCSNRWCDCCRSYRSNVVSVAEDELMRILILMRNFMPGDKQIVEGDWKVAAISYRSYDLEGxTIGTIGAGRIGKELHKHL--------------------KETGATLETNLDE
A9NV09_______________MASKRAVISTFRAASRKPIFSSVSPLASSVRELHxLEKHIPDLHVLISTPFHPAYMTAERIKKAKNLKLLLTAGIGSDHIDLNAAAAAGVTVSEVTGSNVVSVAEDELMRILILVRNFVPGYKQIVNGDWKVAAISYRSYDLEGxTIGTIGAGRIGKELLKRLKPFNCKLLYHDRLSIGPELEKETGATLETNLDD

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
769	33	66			0.997452
787		66		33	0.997452
842			66	33	0.997452
843		33		66	1.0
1006		11		88	0.923564
1051	20			20	0.99255
1053	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain