SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18540

Length: 1063 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene18540 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%

Source	Gene names
Sma3	AT4g39860; At1g35780; At4g39860; F14D7.8; GSVIVT00012867001; GSVIVT00015243001; H0523F07.2; LOC_Os03g27010; OSJNBa0006M15.14; OSJNBb0058G04.7; Os02g0574600; Os03g0387800; Os04g0455600; Os07g0623600; OsI_07766; OsI_16126; OsI_26923; OsJ_07231; OsJ_11095; O

Source	GOs	Term	Type	e value	Identity
Sma3	nucleus	GO:0005634	Cellular Component	0.0	-
Sma3	cytoplasm	GO:0005737	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pumilio RNA-binding repeat	IPR001313	-	0.0	-
Sma3	Armadillo-like helical	IPR011989	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G39860.1	" unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22270.1); Has 152 Blast hits to 146 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 146; Viruses - 0; Other Eukaryotes - 4 (sourc	48%
RefSeq	Arabidopsis thaliana	NP_195696.1	uncharacterized protein [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002310565.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLN8

Fln msg: Distance to subject end: 80 aas, your sequence is shorter than subject: 227 - 311

Fln protein: MQEEVNNPAKTRLGGRSTRDLLTWSSESSPHTPAQTHQSNGTPRLPAGGISSISLTDELTPEQADSLLKRRPCSDSKWREMTGSGIFNVGNSNDESDSALGNSTPDQPSLRPYQQGAGIISQISFAAEESVSPKKPISIAEVAKQKELSGNLKMADDTNVRRQISEAKSKELSGHDIFSPPPELPPKSLNRSLERKEEPKESGEPAQRNIRTSVKVSNCSLQEVIVI

Protein Length: 228

Fln nts: TTTTTTTCCAAAAGTCATGGATGGTATTTGAGGCCTTCACTATCCAATCCAGGGCAGGCCAGCCCACACCCTTACTGGAACCAGGGTGCTCTGTGACACGCGGATTTGGAGGCGGAGATAAACGACATTGATCAGTGGGGTTATTTTATTTATGAATCCATAAGACAAAGTTAGTTGGTCCACCCACTCTTTATGAAAATTTGAATCACCTGGGTGATCTACAGATGACGTGGGTACCAACCAGGCAGTCCATGTCAGCCGTTGGAACCGGGGAAAGTGGTAGGTAATTCTGCAGGTATAAGGAAAAGGAGAGGGACAGCGTCGGCATTTGTTTGGGAGTAAGGAAGAAGAAGAAGCAGGACAGAGTGCGAGCAGCGAAA_-_ATGCAGGAAGAAGTAAACAACCCGGCAAAAACAAGGCTCGGAGGCCGTTCGACTCGCGATCTCCTCACCTGGTCGTCGGAAAGCTCTCCGCACACTCCAGCTCAAACTCATCAGAGCAATGGAACTCCGCGTCTGCCTGCAGGTGGAATCAGCTCGATTTCCTTAACTGACGAACTCACTCCTGAACAGGCGGATTCCTTATTAAAGAGGAGGCCATGTTCTGATTCAAAGTGGAGAGAGATGACTGGGAGTGGAATTTTCAATGTTGGGAATTCAAATGATGAATCTGATTCTGCACTTGGCAACTCTACTCCAGATCAACCTAGTTTACGACCCTATCAGCAAGGTGCAGGAATAATAAGTCAAATATCATTTGCTGCCGAAGAAAGTGTCTCCCCCAAGAAGCCTATTTCTATAGCAGAGGTAGCAAAGCAAAAGGAACTTAGTGGAAATCTAAAGATGGCTGATGATACGAATGTGAGGAGGCAAATCTCCGAGGCTAAATCAAAGGAGCTTAGTGGACATGATATATTTTCTCCCCCACCAGAGTTGCCGCCTAAATCTTTAAATCGCAGTCTGGAACGTAAGGAAGAGCCCAAGGAAAGTGGAGAGCCAGCACAGCGAAACATCCGCACATCTGTAAAGGTCTCAAATTGCAGCCTGCAGGAGGTCATAGTAATATT

Fln Alignment:

Contig18540___KMQEEVNNPAKTRLGGRSTRDLLTWSSESSPHTPAQTHQSNGTPRLPAGGISSISLTDELTPEQADSLLKRRPCSDSKWREMTGSGIFNVGNSNDESDSALGNSTPDQPSLRPYQQGAGIISQISFAAEESVSPKKPISIAEVAKQKELSGNLKMADDTNVRRQISEAKSKELSGHDIFSPPPELPPKSLNRSLERKEEPKESGEPAQRNIRTSVKVSN
A9NLN8_______________KMQEEVNSTARARHGGRSTQDLLTWSSESSPHTPAQTHQNNGTPRLPAGGISSISLTDELTPEQTDSLLKRRPCSDSKWREMTGSGIFSVGDSNDASDSAHGNSTPDQSNLRPYQQAAGIISQISFTAEESVSPKKPISLAEVAKQKELSGNLKMTDDMHIGRHISEAKSKELSGHDIFSPPPELPPKSLNRSLERKEEPKDSGEPAQRNIRTSVKVSN

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
732	11	88			0.923564
733	75	12	12		0.975346
734	85	14			0.993533
736	14	85			0.993533
737	50	33		16	1.0
738	80	20			0.995493
740	20	20			0.99255
743		20	80		0.995493
746		20	80		0.995493
748		80		20	0.995493
765		25		75	0.996473
768		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
708	720	CTT CTT CTT CTT C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain