SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18429

Length: 1469 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18429

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dihydroflavanol-4-reductase 1 n=1 Tax=Medicago truncatula RepID=Q6TQT1_MEDTR	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Sma3	Dihydroflavonol 4-reductase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Dihydrokaempferol 4-reductase.	EC:1.1.1.219	-	3.80004e-41	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	3.80004e-41	%
Sma3	Biosynthesis of phenylpropanoids	01061	3.80004e-41	%
Sma3	Metabolic pathways	01100	3.80004e-41	%
Sma3	Biosynthesis of secondary metabolites	01110	3.80004e-41	%

Source	Gene names
Sma3	A; A1; A1 (Teosinte); A1* (second gene); A1* (second gene)/ (Teosinte); AN6; ANT18; AebiDFR-S1; AeloDFR-S1; AeseDFR-S1; AeshDFR-S1; AespDFR-S1; AespDFR-S2; AespDFR-S3; AespDFR-S4; AespDFR-S5; AespDFR-S6; AesqDFR-D1; AesqDFR-D2; ApDFR; At1g51410; At5g42800

Source	GOs	Term	Type	Identity
Sma3	extrinsic to endoplasmic reticulum membrane	GO:0042406	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	dihydrokaempferol 4-reductase activity	GO:0045552	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	regulation of nitrogen utilization	GO:0006808	Biological Process	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	NmrA-like	IPR008030	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNA9

Fln msg:

Fln protein: MASCGSEKVRGLKGDEACEENKRVVCVTGANGYIGSWLVMRLLEHGYYVHGTVRDPEDPGKVGHLLGLPGASEKLKLFKADLNNEMAFDDAVSGCQGVFHVAKPVNLDSNALQGEVVGPAVRGTVNLLRACERSGTVKRVIHTSSVSAVRFTGKPDPPDTVLDESHWTSVEYCRKTKMVGWMYYIANTYAEEGAHKFGSENKMDVISILPAITVGDFLTLQIPGSVATLMALPKGDADFYSYTPRVPYVHIEDIVRAFIFLYEHPDSKGRYICSLQDVALEELAQVFQNRHQLNVPAKFDNLRSDYIYPCVDSGKLKKLGFEYKYSLEDIVDDAVKSYKRRGLF*

Protein Length: 346

Fln nts: ATGGGGTACAATGGGGATACAAGAACCATGCATCAATTTTTGCATATTATTAAAAAGTAAGTGTATTCGTTCTCTATATTGATCAGTCACAGAGTC_-_ATGGCCAGTTGTGGTTCCGAGAAAGTAAGAGGGTTGAAAGGAGATGAAGCATGCGAAGAGAACAAGCGAGTGGTTTGTGTAACAGGGGCAAATGGGTACATCGGCTCTTGGCTGGTCATGAGATTACTGGAACATGGCTATTATGTTCATGGAACTGTCAGGGACCCAGAAGACCCAGGGAAGGTTGGGCATTTGCTGGGGCTTCCAGGGGCAAGTGAGAAGCTAAAGCTGTTCAAGGCAGATCTCAACAACGAAATGGCCTTTGATGATGCTGTGAGCGGTTGTCAAGGAGTTTTCCATGTTGCCAAGCCTGTTAATCTGGACTCAAACGCTCTTCAGGGGGAGGTTGTTGGTCCTGCGGTGAGGGGAACAGTAAATCTGCTTCGGGCCTGCGAACGATCGGGCACTGTGAAACGAGTGATACATACCTCGTCCGTTTCAGCAGTGAGATTCACTGGGAAACCTGACCCCCCTGATACTGTGCTGGATGAATCTCATTGGACATCGGTCGAGTATTGCAGAAAGACAAAGATGGTCGGATGGATGTACTACATCGCCAACACTTATGCAGAAGAGGGAGCCCATAAGTTCGGATCAGAGAACAAAATGGACGTTATCAGCATCCTACCAGCAATCACTGTGGGGGATTTTCTCACTCTTCAGATCCCAGGCAGCGTGGCTACTCTCATGGCGTTGCCCAAAGGAGATGCAGACTTTTATTCTTACACCCCACGTGTCCCTTACGTACACATAGAGGACATTGTGAGGGCTTTCATCTTCTTGTATGAACATCCAGACTCCAAAGGGAGGTACATCTGCTCTCTCCAGGACGTAGCCTTGGAAGAACTTGCTCAAGTCTTTCAGAACCGACATCAACTTAATGTACCTGCAAAGTTTGATAATCTTCGTAGTGATTACATATATCCTTGTGTGGACTCTGGAAAGCTGAAAAAGCTTGGATTTGAGTACAAATATTCTTTAGAGGATATCGTTGATGATGCAGTCAAATCTTATAAACGGAGAGGACTCTTTTAA___ATGGCACATACGCCTGGCATGATCATAATGTTATTTGCTTGGTAGTGTGACAGTATGCTTCAATAGTTTCACTGTTACTCGTAAAGTTTCATTTATATTTTCAGAAAATAAATCTCATTTTACGTTTTGGCATCTGCTGATCAATCTGTGAATGCCAACGGTGCTTCTTCGGTTGAAGTTACCTTAAAGCTTAGGGTGGCGGTTTTTATGTTTCCTCCGATATAATATGAACGGGCCATATTTGAAAATTTTACTTCTGTGACGTATTTAATGTTATAAAATTTCCTGTGACGTACTTACAAATTTATTGTTTAGGAGAATATTTTTGAATTATATTT

Fln Alignment:

Contig18429___NKRVVCVTGANGYIGSWLVMRLLEHGYYVHGTVRDPEDPGKVGHLLGLPGASEKLKLFKADLNNEMAFDDAVSGCQGVFHVAKPVNLDSNALQGEVVGPAVRGTVNLLRACERSGTVKRVIHTSSVSAVRFTGKPDPPDTVLDESHWTSVEYCRKTKMVGWMYYIANTYAEEGAHKFGSENKMDVISILPAITVGDFLTLQIPGSVATLMALPKGDADFYSYTPRVPYVHIEDIVRAFIFLYEHPDSKGRYICSLQDVALEELAQVFQNRH-QLNVPAKFDNLRSDYIYPCV--DSGKLKKLGFEYKYSLEDIVDDAVKSYKRRGL
A9NNA9_______________HRGTVCVTGAAGFIGSWLIMRLLERGYTVRATVRDTGKPLKTKHLLDLPGANERLTLWKADLDDERSFDAAVDGCEGVFHVATPMDFESEDPENDIIKPTVNGVLNVMKSCAKAKSVKRVVFTSSAGTVNFTDDFQTPGKVFDESCWTNVDLCRKVKMTGWMYFVSKTLAEKAAWDFAEENKIDLLTVIPTLVVGPFIMQTMPPSMITALALLTRNEPHYMILRQVQLVHLDDLCMSHIFVYEHPEAKGRYISSTCDATIVQVAKMLAQKYPEYNVPTKFKD--ADESLPAVPFSSKKLLDLGFKFNYTMEEMFDGAIQCCREKGL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1312	50		50		1.0
1364		6	91		0.999992
1374		7		92	1.0
1375		5	91		0.993509
1426	87		12		0.992554
1434	37			62	1.0
1435	12			87	0.992554
1438	62			25	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain