SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18425

Length: 2125 nt

UniGene Fasta

>sp_v3.0_unigene18425
GGTAATCAACGCAGAGTGAGAAACAAAGTAGGTATCAACGCAGAGTAAGAAAACAAAAGTAAGGTATCAACGCAGAGTAAGAAACAAAGTAGGTATCAACGCAGAGTAAGAACAAAGTAGGTATCAACGCAGAGTAAGAACAAGTAGGTATCAACGCAGAGTAAGAACAAGTAGGTAATCAACGCAGAGTAGAGACAAGTAGGTAATCAACGCAGAGTAAGACAAGTAGGTAATCAACGCAGAGTAAGACAAGTAGGTAATCAACGCAGAGTAAGACAAGTAGGTAATCAACGCAGAGTAAGACAAGTAGGTAATCAACGCAGAGTAAGACAAGTAGGTAATCAACGCAGAGTAACATGGGGATATCTTCTCTAACGTTTGCGAATTCTGATAAGTGCAGCTATTTTTTCAGAAACAGGTCTTCAGTAGTGTTGTTACGCTTTCAAGATGCAGATCTTTGTCAAAACTCTTACCGGCAAGACCATCACTCTTGAAGTCGAGAGCTCTGACACCATTGACAATGTAAAGGCAAAAATCCAGGATAAGGAAGGCATTCCCCCTGACCAACAGCGTTTGATATTTGCTGGAAAGCAGCTGGAAGATGGCCGAACCCTTGCCGATTACAATATCCAGAAGGAATCCACGCTGCATCTTGTCCTCCGTCTGAGGGGTGGCATGCAGATTTTCGTCAAAACCCTGACCGGTAAGACGATAACGTTGGAAGTTGAGAGCTCGGATACCATTGACAATGTAAAAGCCAAGATCCAGGACAAGGAAGGAATCCCGCCTGACCAGCAGCGTCTGATATTTGCCGGAAAGCAGCTCGAAGACGGCCGAACACTGGCAGACTACAATATTCAAAAGGAATCAACCCTGCATCTCGTCCTCCGTTTGAGGGGTGGTATGCAGATTTTTGTTAAAACCCTCACTGGAAAGACGATCACTTTGGAAGTTGAGAGCTCGGATACCATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCTGACCAGCAGCGTTTAATCTTTGCCGGAAAGCAGCTCGAGGACGGGAGAACCCTTGCCGATTACAACATCCAGAAAGAATCCACCTTGCACCTTGTCCTCCGTCTGAGGGGTGGCATGCAGATCTTTGTCAAAACCCTAACTGGTAAGACGATTACTTTGGAAGTTGAGAGCTCGGACACCATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCGCCAGACCAGCAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGTAGGACCTTGGCTGACTACAACATTCAAAAGGAGTCAACCCTGCATCTGGTGCTTCGTCTAAGAGGAGGGATGCAGATCTTTGTAAAAACCCTTACAGGTAAAACAATTACTCTGGAAGTGGAAAGCTCTGACACCATTGATAATGTGAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCTGACCAGCAGAGGTTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTCGTACTCTGGCCGATTATAATATTCAGAAGGAGTCGACCCTTCACCTGGTTCTCCGTCTCCGTGGCGGCTTTTAGGTGGATGGGCTCTTATGTGTCAATGATGGTCTGGTGATGTTCAGTTGTCCTACTTGTCGTGGACAAGTACTGTTTATGTTTCTATGTCTATGTGCTGTTTGTGTGTTTAGTTTCAGGTTATTATTTCCACTTTGTTTGTTGGTCAGTCGAAGCACTACCTGGTCGGTAGTGCCATGCTATTTCCTTTAATATAAGGACTATGTTATCTGTTGTGTGAATCAATCTGCTATTATGTGTTAAGTGAATGTAGCTGATAATGTTGTGCTATTTTTTTTGGAGGCTATATATGCTAAAAATCTTTGGTGAAATTTAAGTTAGGCTGAAATTACTATGTCTATGCATTCATTGGCTTGCTTATCTTTTGGATATTCAGTGGCTTTCCTATGCCCTCAAGAGATTGCTGATGGGAGTTACTGAGAGATGGTCAATATTTGTATTGGTTTTCGTATCTCTGGGGGAGGTTGATGAAACTTTTATATTGGCGATCGTATCCTGTCAATAGTTTGGATCTTCATTGGCTTTGTTGAGGGAA

Ace file of the UniGene sp_v3.0_unigene18425

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Polyubiquitin-C n=2 Tax=Sus scrofa RepID=UBC_PIG	-	-	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Sma3	Ubiquitin	-	-	-

Source	Gene names
Sma3	PUB4;

Source	GOs	Term	Type	e value	Identity
Sma3	protein modification process	GO:0006464	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G20620.1	UBQ4 ubiquitin 4 chr5:6973315-6974463 REVERSE LENGTH=382	100%
RefSeq	Arabidopsis thaliana	NP_849300.4	polyubiquitin 10 [Arabidopsis thaliana]	100%
RefSeq	Populus trichocarpa	XP_002327848.1	predicted protein [Populus trichocarpa]	100%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSZ6

Fln msg: your sequence is shorter than subject: 382 - 458

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF*

Protein Length: 383

Fln nts: GGTAATCAACGCAGAGTGAGAAACAAAGTAGGTATCAACGCAGAGTAAGAAAACAAAAGTAAGGTATCAACGCAGAGTAAGAAACAAAGTAGGTATCAACGCAGAGTAAGAACAAAGTAGGTATCAACGCAGAGTAAGAACAAGTAGGTATCAACGCAGAGTAAGAACAAGTAGGTAATCAACGCAGAGTAGAGACAAGTAGGTAATCAACGCAGAGTAAGACAAGTAGGTAATCAACGCAGAGTAAGACAAGTAGGTAATCAACGCAGAGTAAGACAAGTAGGTAATCAACGCAGAGTAAGACAAGTAGGTAATCAACGCAGAGTAAGACAAGTAGGTAATCAACGCAGAGTAACATGGGGATATCTTCTCTAACGTTTGCGAATTCTGATAAGTGCAGCTATTTTTTCAGAAACAGGTCTTCAGTAGTGTTGTTACGCTTTCAAG_-_ATGCAGATCTTTGTCAAAACTCTTACCGGCAAGACCATCACTCTTGAAGTCGAGAGCTCTGACACCATTGACAATGTAAAGGCAAAAATCCAGGATAAGGAAGGCATTCCCCCTGACCAACAGCGTTTGATATTTGCTGGAAAGCAGCTGGAAGATGGCCGAACCCTTGCCGATTACAATATCCAGAAGGAATCCACGCTGCATCTTGTCCTCCGTCTGAGGGGTGGCATGCAGATTTTCGTCAAAACCCTGACCGGTAAGACGATAACGTTGGAAGTTGAGAGCTCGGATACCATTGACAATGTAAAAGCCAAGATCCAGGACAAGGAAGGAATCCCGCCTGACCAGCAGCGTCTGATATTTGCCGGAAAGCAGCTCGAAGACGGCCGAACACTGGCAGACTACAATATTCAAAAGGAATCAACCCTGCATCTCGTCCTCCGTTTGAGGGGTGGTATGCAGATTTTTGTTAAAACCCTCACTGGAAAGACGATCACTTTGGAAGTTGAGAGCTCGGATACCATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCTGACCAGCAGCGTTTAATCTTTGCCGGAAAGCAGCTCGAGGACGGGAGAACCCTTGCCGATTACAACATCCAGAAAGAATCCACCTTGCACCTTGTCCTCCGTCTGAGGGGTGGCATGCAGATCTTTGTCAAAACCCTAACTGGTAAGACGATTACTTTGGAAGTTGAGAGCTCGGACACCATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCGCCAGACCAGCAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGTAGGACCTTGGCTGACTACAACATTCAAAAGGAGTCAACCCTGCATCTGGTGCTTCGTCTAAGAGGAGGGATGCAGATCTTTGTAAAAACCCTTACAGGTAAAACAATTACTCTGGAAGTGGAAAGCTCTGACACCATTGATAATGTGAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCTGACCAGCAGAGGTTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTCGTACTCTGGCCGATTATAATATTCAGAAGGAGTCGACCCTTCACCTGGTTCTCCGTCTCCGTGGCGGCTTTTAG___GTGGATGGGCTCTTATGTGTCAATGATGGTCTGGTGATGTTCAGTTGTCCTACTTGTCGTGGACAAGTACTGTTTATGTTTCTATGTCTATGTGCTGTTTGTGTGTTTAGTTTCAGGTTATTATTTCCACTTTGTTTGTTGGTCAGTCGAAGCACTACCTGGTCGGTAGTGCCATGCTATTTCCTTTAATATAAGGACTATGTTATCTGTTGTGTGAATCAATCTGCTATTATGTGTTAAGTGAATGTAGCTGATAATGTTGTGCTATTTTTTTTGGAGGCTATATATGCTAAAAATCTTTGGTGAAATTTAAGTTAGGCTGAAATTACTATGTCTATGCATTCATTGGCTTGCTTATCTTTTGGATATTCAGTGGCTTTCCTATGCCCTCAAGAGATTGCTGATGGGAGTTACTGAGAGATGGTCAATATTTGTATTGGTTTTCGTATCTCTGGGGGAGGTTGATGAAACTTTTATATTGGCGATCGTATCCTGTCAATAGTTTGGATCTTCATTGGCTTTGTTGAGGGAA

Fln Alignment:

Contig18425___MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
C0PSZ6_______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
734		14	85		0.993533
735	14	85			0.993533
737		85		14	0.993533
802			66	33	0.997452
803		66		33	0.997452
1694	2		97		0.979771
1802	94	5			0.999994
1816		13		86	1.0
1820	6			93	0.999453
1821	6	93			0.999453
1871			16	83	0.994512
1872			16	16	0.988813
1873	16			83	0.994512
1874	16		83		0.994512
1875		16	83		0.994512
1877			85	14	0.993533
1878			85	14	0.993533
1899	33			66	1.0
1902	16			83	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
193	355	AGACAAGTAGGTAATCAACGCAGAGTA AGACAAGTAGGTAATCAACGCAGAGTA AGACAAGTAGGTAATCAACGCAGAGTA AGACAAGTAGGTAATCAACGCAGAGTA AGACAAGTAGGTAATCAACGCAGAGTA AGACAAGTAGGTAATCAACGCAGAGTA A	163

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain