SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18281

Length: 1183 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18281

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein RHOMBOID-like 1 [Arabidopsis thaliana] dbj\|BAF00472.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC08202.1\| protein RHOMBOID-like 1 [Arabidopsis thaliana]	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Membrane protein	-	-	6.884e-20	-

Source	ECs	Term	Type	e value	Identity
Sma3	Rhomboid protease.	EC:3.4.21.105	-	5.878e-16	-

Source	Gene names
Sma3	AT4g23070; At1g12750; At1g52580; At1g63120; At1g77860; At2g29050; At3g53780; At4g23070; At5g07250; AtRBL1; AtRBL2; F16M19.4; F5K20_80; F6D8.20; F7H19.260; GSVIVT00000363001; GSVIVT00001124001; GSVIVT00007376001; GSVIVT00015298001; GSVIVT00021327001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Peptidase S54, rhomboid	IPR002610	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G29050.1	ATRBL1, RBL1 RHOMBOID-like 1 chr2:12478245-12480121 FORWARD LENGTH=389	65%
RefSeq	Arabidopsis thaliana	NP_180469.3	protein RHOMBOID-like 1 [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002321905.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKV6

Fln msg: your sequence is shorter than subject: 302 - 383

Fln protein: FSLRGWNENLQENPLFGPSSATLQKMGALEWTKVVKEHQGWRLITCIWLHAGVIHLLANMLSLIFIGIRLEQEFGFVRIGIVYLVSAFGGSVLSALFNQNGVSVGASGALFGLLGAMLSELITNWTIYASKFAALVTLLFIIVVNLAFGILPHVDNFAHIGGFISGFLLGFVFLMRPQFGWVNRKNIPPGYAVNSVVKSKHNVYQYTLGLLSLILLIVGFTVGLVLLFHGVNANKHCSWCHYLDCVPTSRWSCNDGVITCQEIQSDSDFTLICQNGGKSKVYPFQSITEAKKRQLCSQQCS*

Protein Length: 303

Fln nts: ATTCTCCTTGAGGGGCTGGAATGAGAACCTCCAGGAGAATCCTCTTTTTGGACCTTCATCGGCCACTTTACAAAAGATGGGAGCTCTTGAGTGGACTAAGGTGGTCAAGGAGCACCAGGGATGGCGGCTTATCACATGTATCTGGTTGCATGCTGGGGTCATTCATCTACTTGCCAATATGTTGAGTCTCATATTTATAGGGATTCGCTTGGAGCAGGAATTTGGTTTTGTGAGGATTGGAATAGTCTACCTAGTCTCTGCTTTTGGTGGTAGTGTGTTGTCAGCACTTTTCAACCAGAATGGTGTATCTGTTGGCGCATCTGGTGCATTATTTGGTTTATTGGGGGCGATGCTTTCAGAGCTTATTACTAACTGGACAATTTATGCCAGTAAGTTTGCAGCATTGGTAACACTACTTTTCATTATTGTTGTCAACTTGGCTTTTGGGATACTACCACATGTAGACAACTTTGCCCACATTGGAGGATTTATATCAGGATTTCTTCTTGGATTTGTGTTTCTGATGCGGCCTCAGTTTGGATGGGTGAATCGCAAGAACATTCCGCCTGGATATGCTGTGAACTCTGTTGTCAAATCTAAGCACAATGTATATCAATATACACTAGGGTTGTTATCACTTATTCTTCTTATTGTCGGATTTACTGTTGGCTTGGTGTTGCTTTTCCATGGTGTCAATGCAAATAAGCACTGCAGCTGGTGCCATTATTTAGATTGCGTGCCGACATCCAGGTGGTCTTGTAATGATGGAGTGATTACTTGCCAGGAAATTCAAAGTGACAGTGATTTCACACTGATTTGTCAAAATGGTGGCAAGAGTAAGGTCTATCCATTCCAAAGTATAACTGAAGCCAAGAAAAGGCAGCTTTGTAGTCAACAGTGCTCTTAA___TTTCATAGTAAGGTCTATCCATTCCAAAGTATAACTGAAGCCAAGAAAAGGCAGCTTTGAAGCCAAGAAAAGGCAGCTTTGTAGTCAACAGTGCTCTTAATTTCATATGTACATGCACAAACATACGTATTAGAAAATATTGAAGGGTTGTTTAAGTAATATTTTCCATTCTAACTACAGTCTTTACAGGTTGTAAATTAATAACTCGGAACAAGTCATTACACTACTTGCTATTCTTTATTAATAAATGGCTAAGATCTTGATATTGAGTTGGCT

Fln Alignment:

Contig18281___LQENPLFGPSSATLQKMGALEWTKVVKEHQGWRLITCIWLHAGVIHLLANMLSLIFIGIRLEQEFGFVRIGIVYLVSAFGGSVLSALFNQNGVXXXXXXXXXXXXXXXXXELITNWTIYASKFAALVTLLFIIVVNLAFGILPHVDNFAHIXXXXXXXXXXXXXXMRPQFGWVNRKNIPPGYAVNSVVKSKHNVYQYTXXXXXXXXXXVGFTVGLVLLFHGVNANKHCSWCHYLDCVPTSRWSCNDGVITCQEIQSDSDFTLICQNGGKSKVYPFQSITEAKKRQLCSQQCS
B8LKV6_______________LKENPLFGPSSSTLEKMGALEWQKVVKEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQEFGFARIGTVYLVSAFGGSVLSALFNQNGVSVGASGALFGLLGAMLSELITNWTIYASKFAALVTLVFIIVVNLAFGLLPHVDNFAHIGGFISGFLLGFVFLMRPQFGWVNRKIIPPGYDVNSVVKSKHNAYQYILGLLSLILLIVGFTVGLVLLFHGVNANKHCSWCHYLDCVPTSRWSCNDGVIACQETQSDTEFTLICQNGGKSKIYPFQNISEAKKRQLCLQQCS

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1075		83	16		0.994512
1082	20	20			0.99255
1153		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain