SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18242

Length: 1240 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18242

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF300 multi-domain protein	-	-	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Organic solute transporter Ost-alpha	IPR005178	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G11200.1	Protein of unknown function (DUF300) chr1:3753896-3755459 FORWARD LENGTH=295	68%
RefSeq	Arabidopsis thaliana	NP_563884.1	uncharacterized protein [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002305664.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNY2

Fln msg:

Fln protein: MDIMQMDRRTSTLLGAGFCTMLTMHFTVQLLSQHLFYWKNPKEQKAIIIIILMAPIYAIDAFAGLVDIEGSKIYFMFLDSIKECYEGLVIAKFLALMYSYLNISMSQKIVPDGIKGREIHHSFPMTLFQPRIVHLDHHTLKLLKYWTWQFAIIRPVLSILMIVFQLLGLYTGWISWIFSIILNISVSLALYSLVVFYHVFAKELEPHKPLAKFLCVKGIVFFCFWQGVVLDILASAGIIRSHHFWLDVEHIQEALQNVLICLEMVVFSVMQQYAYHVHPYTGEVQELLRKGRKAD*

Protein Length: 297

Fln nts: GTTCCAGCACTATGGGGGATATGATCAAAATTCCAAGAAAAGTGAAGTTACGATATATAAATCCGATAAAGACAGGCGAGCTCCACTTTCGACTCTACCGATCGTCTTGGACCGATGGTTTCAGCGTTGAAGGTCAATGAACGCCACTGAAACAGTTTTATAAGTAGTTGTATCGGACTATCAATTTCGACATCTGGATCTGGTATATTGTGAGGTTGCTAGCATAAAACGGTTTCGAAGAACAAGTGAGAGTTTAGCAAAT_-_ATGGATATAATGCAGATGGACCGGAGAACGTCGACACTGCTTGGGGCAGGATTCTGCACAATGTTGACGATGCATTTTACAGTTCAGCTGCTATCACAGCACTTGTTCTATTGGAAGAATCCCAAGGAGCAGAAGGCCATTATTATTATCATATTAATGGCTCCTATATATGCCATTGATGCATTTGCTGGCTTAGTAGATATTGAAGGAAGCAAAATCTACTTCATGTTCTTGGATTCAATTAAAGAGTGTTATGAGGGCCTGGTGATTGCGAAATTCTTGGCATTGATGTATAGCTATTTGAATATCTCCATGAGCCAGAAAATAGTCCCTGATGGGATCAAGGGTAGAGAGATTCACCATTCATTTCCCATGACACTTTTTCAGCCTCGCATAGTGCATCTGGATCATCATACACTGAAGCTTCTTAAATATTGGACATGGCAATTTGCTATCATAAGACCAGTTTTGTCAATTTTAATGATAGTTTTCCAATTGCTTGGCCTATATACTGGATGGATCAGTTGGATTTTCTCAATTATATTGAACATTTCTGTATCCCTGGCCCTTTATTCTCTGGTCGTTTTTTACCATGTCTTTGCCAAGGAGTTGGAACCCCACAAGCCCCTGGCAAAGTTTTTGTGCGTCAAAGGAATTGTATTCTTTTGCTTCTGGCAGGGAGTTGTACTTGACATACTGGCCTCTGCTGGTATTATCCGCTCCCACCATTTCTGGCTTGATGTGGAACACATTCAAGAGGCTTTGCAAAATGTGCTGATCTGTTTGGAGATGGTGGTATTTTCTGTTATGCAACAATATGCATACCATGTTCACCCATACACCGGAGAAGTTCAGGAGTTGCTTAGAAAGGGGAGGAAGGCAGACTGA___CAAATTTGACCATAGAAATTATTTAAATATCCTAAAAGATATAAGCTCAATAGTGAAGAACAATTTTCAGTTTTTTTTTTTTTTTTTGGC

Fln Alignment:

Contig18242___MDIMQMDRRTSTLLGAGFCTMLTMHFTVQLLSQHLFYWKNPKEQKXXXXXXXXXXXXXXDAFAGLVDIEGSKIYFMFLDSIKECYEGLVIAKFLALMYSYLNISMSQKIVPDGIKGREIHHSFPMTLFQPRIVHLDHHTLKLLKYWTWQFAIIRPVLSILMIVFQLLGLYTGWISWIFSIILNISVSLALYSLVVFYHVFAKELEPHKPLAKFLCVKGIVFFCFWQGVVLDILASAGIIRSHHFWLDVEHIQEALQNVLICLEMVVFSVMQQYAYHVHPYTGEVQELLRKGRKAD
A9NNY2_______________MDILQMDRKTLTLLGSGFCTMLTMHFTVQLLSQHLFYWKKPKEQKAIIIIILMAPIYSIDAFAGLVDIEGSKTYFMFLDSIKECYEGLVIAKFLALLYSYLNISISQNIVPDGIKGREIHHSFPITLFQPKTVHLDHHTLKLIKYWTWQFAIIRPVLSILMIFFQLLGLYTGWISWVFSIILNISVSLALYSLVLFYHVFAKELAPHKPLSKFLCVKGIVFFCFWQGIVLGILASAGIIRSHHFWLDVEHIEEALQNVLICLEMVIFSVMQQYAYHVYPYTGEVQELLRKGRKAD

SNPs (tot: 3)

Position	C %	G %	T %	Probability
667	83	16		0.994512
668		16	83	0.994512
1149	25		75	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain