SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18126

Length: 1453 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene18126 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Atrophin-1 multi-domain protein	-	-	4.0e-14	23%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P215

Fln msg:

Fln protein: MAEFIQRLILTFIVMGFLCHSFKWVSAGGPIQAPQAGFAGSGSPALVPSKSPFSSFLPSPKSAVSVPTAAAPSNSILGSPISAPVHSIPLAAPSKSILGSPISAPSHASPMAAPSAATATTPISKPPVYVSQPSTSPVSTSPASTPPASTPVKLLSPSSSPMAPSLSPTLAVPVSATPSSPTYVPSSSPISTVSPTMEPVSSPVSVPVISPVSVPVISPISVPVISPISVPVTSPSPSPAQISPLLAPVGSPLSPVPTVSPQISPSTTPVGSPVETPTEDSYAEVPSPSPSVPQDDGDTSAATFTRSVATGFGAAISCALQVYVLAFL*

Protein Length: 330

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGTCATTCCCTTGGACCTTTCAACAACGACATTCTTCAATATGCTTTAATATCACATCCACCCTTTATCAGCACTCCAATTATTAATTAAATCAGTCAGTCCAAATGAATCGGACCCCCAGCCGAGCCGAGCCGGCCAATCTGTAAACTCCCCCGTGAATAAAAATCTCAGCTGTGGCAGCGGCGCTAGAGTCGCTCTAAGATCC_-_ATGGCCGAGTTTATCCAGAGGTTGATTCTGACGTTCATTGTCATGGGATTTCTGTGTCACAGCTTCAAATGGGTATCAGCAGGTGGCCCCATTCAGGCCCCTCAGGCTGGATTCGCAGGTTCAGGTTCTCCTGCATTGGTGCCATCGAAATCGCCATTTTCTTCTTTCTTGCCATCTCCCAAGAGCGCTGTTTCGGTACCCACTGCTGCTGCTCCCTCTAACTCCATTCTCGGATCCCCAATTTCTGCCCCTGTCCATTCAATCCCCCTTGCTGCTCCTTCCAAGTCCATTCTTGGATCCCCCATTTCTGCACCTTCTCATGCATCGCCCATGGCTGCTCCCTCGGCTGCAACTGCAACTACACCAATTTCGAAGCCTCCTGTCTATGTTTCTCAGCCCTCAACATCCCCTGTTTCAACATCCCCTGCTTCAACACCCCCTGCTTCCACCCCAGTCAAGCTGCTATCTCCTTCATCGTCTCCCATGGCTCCTTCCCTTTCGCCAACTCTAGCCGTACCTGTGTCAGCCACGCCCTCAAGTCCAACCTACGTCCCGAGTTCCTCTCCCATTTCCACCGTTTCTCCGACCATGGAACCAGTATCTTCTCCCGTTTCTGTACCTGTAATATCTCCCGTTTCTGTACCTGTAATATCTCCCATTTCTGTACCTGTAATTTCTCCCATTTCTGTACCTGTAACTTCGCCTTCCCCTTCCCCTGCACAGATCTCACCATTGTTAGCACCAGTGGGATCACCATTAAGCCCTGTTCCTACAGTCTCGCCTCAGATCTCTCCCTCTACTACGCCTGTGGGTTCTCCAGTGGAAACTCCAACCGAAGATTCATACGCTGAAGTTCCATCTCCCTCTCCATCTGTACCTCAAGACGACGGTGATACCTCGGCAGCTACATTCACCAGATCAGTGGCAACAGGCTTCGGCGCTGCGATTTCCTGTGCTTTACAGGTTTATGTTCTCGCGTTTCTGTAA___TGTCAAGGTGAACCATTAGCGAAAAACAGTGGATGTCGTGGAAGTGTTGTGGATCACGCGCAGGCTTTCGAGTTCGTACTGGTAGTGATTCAATGGATGTCCGTAAGTCAATAAAGAGATCGTTTACTCAATCTCTCTGTTATATTTGATCTTGTATTCTTCGACGATTGGTCTTATAAATATTAAACACCATTGTATGGTTGAATAACTTATTCTGAATTTATTCAATTTATTTC

Fln Alignment:

Contig18126___MAEFIQRLILTFIVMGFLCHSFKWVSAGGPIQAPQAGFAGSGSPALVXXXXXXXXXXXXXXXXXXXXXXXXXSNSILGSPISAPVHSIPLAAPSKSIL
A9P215_______________MAEFIERFILTLIVMGFLRHNFKWALAGGPIQAPKSGYAGSPS---FLPSKSPLHSYLPSPRSAVSTPSAAPSKSILGSPISAPIHASPIAAPSKSIL

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
859		10		90	0.90298
1135	11		88		0.923564
1136		11	88		0.923564
1137	11		88		0.923564
1138			88	11	0.923564
1139		88		11	0.923564
1195		88	11		0.923564
1200		11		88	0.923564
1204			11	88	0.923564
1205		88	11		0.923564
1208	11			88	0.923564
1209		12	87		0.992554
1212		12		87	0.992554
1213	87		12		0.992554
1305	14			85	0.993533
1320	75	25			0.996473
1321		25		75	0.996473
1322		25		75	0.996473
1327		33		66	0.997452
1328		33	66		0.997452
1329		33	66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1295	1309	CGGCT CGGCT CGGCT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain