SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18094

Length: 1376 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18094

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cyclin-dependent kinase B1-1 n=2 Tax=Oryza sativa RepID=CKB11_ORYSJ	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G20930.1	" CDKB2;2 cyclin-dependent kinase B2;2 chr1:7292752-7294664 REVERSE LENGTH=315"	69%
RefSeq	Arabidopsis thaliana	NP_173517.1	cyclin-dependent kinase B2-2 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002336374.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNM1

Fln msg:

Fln protein: MSILGSANLVVCYSTVYAVTMDAYEKLEKVGEGTYGKVYKAKDKNTGQLVALKKTRLESDDEGIPPTALREISLLQMLSQDIHIVRLLDVEHTENKNGKPLLYLVFEFMDSDLKKYIDGYRRSHTKVPPSIIKSFMYQLCQGVAYCHSRGVMHRDLKPHNLLVDKQRGVVKIADLGLGRAFTIPIKKYTHEIVTLWYRAPEVLLGATHYSTPVDIWSVGCIFAEMVRLQALFIGDSEVQQLFKIFSFLGTPNEEVWPGVTNFRDWHIYPEWKPQDISSAVPDLEASGVDLLSKMLVYEPSKRISAKKALEHPYFDDLDKSQF*

Protein Length: 324

Fln nts: GGGAGAAACCCGTTTCAAGCCTTTAACGAAAGTCCAACGGTCAGAAAATTCAAAATGACCGTTTAGAGGCAGAGCCAATCTAGGACCACACTCCATTTATATATGCCCTCTGCTTCTCTCGACC_-_ATGAGCATCCTCGGCTCTGCGAATCTTGTTGTTTGTTACTCTACTGTGTACGCTGTAACAATGGATGCCTATGAGAAGTTGGAGAAGGTGGGAGAGGGAACCTATGGGAAGGTGTACAAGGCCAAGGACAAGAACACAGGGCAATTGGTCGCCCTTAAGAAAACAAGGCTGGAGAGCGACGATGAGGGTATTCCTCCCACCGCTCTCCGCGAGATTTCCCTTCTGCAGATGCTTTCTCAGGACATCCACATTGTCAGGCTGTTGGATGTAGAACACACAGAGAACAAGAACGGGAAACCCCTTCTTTACTTGGTTTTTGAATTCATGGACTCTGATCTCAAGAAGTACATTGATGGTTATCGCCGAAGCCACACAAAAGTCCCTCCCAGTATTATTAAGAGCTTCATGTACCAGTTGTGCCAGGGGGTTGCTTACTGCCACAGTCGTGGTGTAATGCACAGGGACCTGAAGCCTCACAATCTCTTGGTGGATAAGCAAAGAGGTGTAGTAAAAATAGCAGATCTTGGCCTCGGAAGAGCATTTACAATTCCTATTAAGAAATATACACATGAGATTGTCACTCTCTGGTACAGGGCTCCTGAAGTTCTTCTGGGGGCTACTCACTACTCTACACCTGTAGACATCTGGTCTGTTGGTTGTATATTCGCTGAAATGGTCCGACTGCAAGCCCTGTTTATTGGAGATTCTGAAGTACAACAACTTTTCAAGATTTTCAGTTTTCTAGGAACTCCCAATGAAGAAGTCTGGCCAGGAGTGACTAATTTCAGGGACTGGCATATCTATCCTGAATGGAAACCCCAAGATATAAGCTCTGCTGTTCCAGACTTGGAAGCAAGTGGTGTAGACCTGTTGTCTAAAATGCTGGTTTATGAGCCGTCCAAACGAATATCAGCTAAAAAGGCATTGGAACATCCCTATTTTGATGATCTGGATAAATCTCAGTTCTAA___CTTCTGAGATCCCTTTTAAGGATTTAAGAAATTCAGGATAGTATATATAAATTACTGCATGCATTGGTGGTTTTGGAAATGTCCCATTTTCTACGAATTCATCTTTGCAGAGGCAAATATATTAGCCAGTATGTGTTTCTTTTGATGTGTTTGGGCAGGCAAACAAGCAATGTTTGGTTGCTGTTGTGGACCTTCTAAATGTTGTATTCCCACACTGGAGAGTAACTTTCTTTAAAATTAATGTTAAGATTTAAAATTAATGTTAAGATGTGATATTATTCAG

Fln Alignment:

Contig18094___MDAYEKLEKVGEGTYGKVYKAKDKNTGQLVALKKTRLESDDEGIPPTALREISLLQMLSQDIHIVRLLDVEHTENKNGKPLLYLVFEFMDSDLKKYIDGYRRSHTKVPPSIIKSFMYQLCQGVAYCHSRGVMHRDLKPHNLLVDKQRGVVKIADLGLGRAFTIPIKKYTHEIVTLWYRAPEVLLGATHYSTPVDIWSVGCIFAEMVRLQALFIGDSEVQQLFKIFSFLGTPNEEVWPGVTNFRDWHIYPEWKPQDISSAVPDLEASGVDLLSKMLVYEPSKRISAKKALEHPYFDDLDKSQF
A9NNM1_______________MDAYEKLEKVGEGTYGKVYKAKDKNTGQLVALKKTRLESDDEGIPPTALREISLLQMLSQDIHIVRLLDVEHTENKNGKPLLYLVFEYMDSDLKKYIDGYRRSHTKMPPKIIKSFMYQLCQGVAYCHSRGVMHRDLKPHNILVDKQRGVIKIADLGLGRAFTIPIKKYTHEIVTLWYRAPEVLLGATHYSTPVDIWSVGCIFAEMSRMQALFIGDSEVQQLFKIFRFLGTPNEEIWPGVTKLRDWHIYPQWKPQDISSAVPDLEPSGVDLLSKMLAYEPSKRISAKKALQHPYFDDLDKSQF

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1236		2		91	0.999992
1325	4			96	0.99411
1326	4	96			0.99411
1349	92		2		0.991359
1367		8		92	0.999718
1376		11		88	0.999952

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain