SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17988

Length: 1531 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17988

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Aspartic proteinase nepenthesin-2; AltName: Full=Nepenthesin-II; Flags: Precursor dbj\|BAD07475.1\| aspartic proteinase nepenthesin II [Nepenthes gracilis]	-	-	0.0	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%

Source	Gene names
Sma3	At2g03200; At3g59080; At5g33340; F17J16_130; GSVIVT00007512001; GSVIVT00019250001; H0818E04.1; NEP1; OSIGBa0152K17.10; OSJNBa0064H22.10; Os04g0448300; OsI_16079; OsJ_14967; PHYPADRAFT_14028; PHYPADRAFT_141111; POPTRDRAFT_549896; RCOM_1697100; VITISV_00633

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXW9

Fln msg: atg_distance in limit (1-15): atg_distance = 2,

Fln protein: MARLGILGVMLIATIASCALQFNVNCSGRNEAQENNKNFRIDLIRRDSGIPSNAERLLRAIARSKQRLQRLQHYISQNSGLGSKSYYSPISAADGEFVMQIGIGYPVPVTMHAILDTGSDLIWTQCQPCDDYCIPQSDPMYNPAQSSTYKNVSCSSYFCLAVGEHRCDGGANCIYYYQYGDPSHTAGVLAYETFSLATAALRARTYIPQIAFGCGHDQGGFFDDSAGIVGLGRGPLSLVSQIGSSIDNVFSYCLGSIENKAQRSPLFLGRAGIFSSDFNVTSLILNNPFPTFYYLGLAGINVGGEPVQFPGDTFKIQPDGGGGLIIDSGTTLTFFVDPAYTPFIAAVRSAIEAQAVDSTQLGFDLCYNSTSDLRLPSITFNFVGGAEYVLPPENSFISNQEDTGGLVCLAFASSGPAGSISIFGNIQQQNFHIVYDLGRNNLYFTPTACDSM*

Protein Length: 454

Fln nts: ACGACGATCTTGCCTGTCTCTACTTCTCTGGACTATTGTTGCAGC_-_ATGGCGAGACTCGGCATTTTGGGCGTTATGCTAATCGCCACGATCGCTTCATGTGCTCTGCAATTTAATGTAAATTGCTCAGGGCGCAACGAAGCACAGGAGAATAACAAAAATTTCAGAATAGATCTCATTCGTCGAGACTCCGGGATCCCCTCAAACGCTGAACGACTGCTGCGAGCAATTGCACGAAGCAAGCAGAGGTTGCAGAGGCTGCAACACTATATTTCCCAAAATTCTGGCCTCGGCTCCAAGAGTTATTACAGTCCCATTAGCGCCGCTGATGGCGAATTTGTAATGCAGATTGGAATTGGGTACCCAGTTCCAGTAACCATGCATGCAATACTCGACACTGGCAGCGATTTGATCTGGACCCAGTGCCAACCCTGCGACGATTACTGTATTCCACAGAGTGACCCAATGTATAATCCCGCGCAGTCATCGACTTACAAGAATGTTTCGTGCTCCAGCTATTTTTGCTTGGCCGTAGGGGAGCACAGGTGCGATGGCGGCGCAAATTGCATTTATTATTACCAGTACGGAGACCCTTCCCACACTGCTGGAGTTTTGGCTTACGAAACGTTCAGTCTGGCAACAGCAGCTCTGCGCGCGCGGACCTATATTCCGCAGATTGCATTTGGTTGCGGCCATGACCAAGGCGGTTTTTTCGACGATTCAGCCGGTATAGTGGGTCTGGGCCGAGGGCCTCTGTCACTGGTTTCGCAGATTGGATCTTCCATTGACAACGTTTTCTCCTATTGTTTAGGATCCATAGAAAATAAGGCACAGCGAAGCCCTTTGTTCTTGGGTAGAGCTGGTATCTTTAGTTCAGATTTTAATGTCACTTCTCTGATTCTAAACAATCCATTCCCGACTTTTTACTATCTGGGCCTCGCTGGAATCAATGTGGGAGGCGAACCAGTCCAGTTTCCGGGTGATACCTTCAAAATTCAGCCCGATGGAGGTGGAGGACTTATAATTGATTCTGGAACGACTCTAACGTTTTTTGTGGATCCGGCATACACACCCTTTATTGCTGCTGTGCGGTCCGCCATTGAAGCTCAGGCAGTTGATTCAACTCAACTAGGTTTCGATCTCTGTTACAATTCTACGTCTGATCTCCGACTTCCTAGTATTACTTTCAACTTTGTAGGTGGGGCAGAGTATGTTTTGCCGCCAGAGAATTCGTTCATATCAAATCAGGAAGATACTGGTGGGTTGGTTTGTCTTGCGTTCGCATCTTCAGGTCCCGCAGGTTCGATATCGATATTTGGAAACATTCAGCAGCAGAATTTCCACATCGTCTACGATCTCGGCCGCAACAATCTTTACTTTACTCCAACTGCCTGTGATTCTATGTAA___TACCACTCCAATACTCCAACTACCTGTGATTCTACGTAATACCACTCTTCCATTAGATTCACCTATTACTTTATGTTTCATAAATGTTAAAATTATACTGTTAAAATAATTTATAATTAATATTATT

Fln Alignment:

Contig17988___RIDLIRRDS-------GIPSNAERLLRAIARSKQRLQRLQHYISQNSGLGSKSYYSPISAADGEFVMQIGIGYPVPVTMHAILDTGSDLIWTQCQPCDDYCIPQSDPMYNPAQSSTYKNVSCSSYFCLAVGEHRCDGGANCIYYYQYGDPSHTAGVLAYETFSLATAALRARTYIPQIAFGCGHD-QGGFFDDSAGIVGLGRGPLSLVSQIGSSIDNVFSYCLGSI-ENKAQRSPLFLGR-AGIFSSDFNVTSLILNNPFPTFYYLGLAGINVGGEPVQFPGDTFKIQPDGGGGLIIDSGTTLTFFVDPAYTPFIAAVRSAIEAQAVDSTQLGFDLCY---NSTSDLRLPSITFNFVGGAEYVLPPENSFISNQEDTGGLVCLAFASSGPAGSISIFGNIQQQNFHIVYDLGRNNLYFTPTACDSM
A9NXW9_______________RIDLVRTDSPLSPFSPGNISSTERFKRAIKRSQDRLEKLQMSVDE-----VKAVEAPVYAGNGEFLMKMAIGTP-SLSFSAILDTGSDLTWTQCKPCTD-CYPQPTPIYDPSQSSTYSKVPCSSSMCQALPMYSCSG-ANCEYLYSYGDQSSTQGILSYESFTLTSQSL------PHIAFGCGQENEGGGFSQGGGLVGFGRGPLSLISQLGQSLGNKFSYCLVSITDSPSKTSPLFIGKTASLNAKTVSSTPLVQSRSRPTFYYLSLEGISVGGQLLDIADGTFDLQLDGTGGVIIDSGTTVTYLEQSGYDVVKKAVISSINLPQVDGSNIGLDLCFEPQSGSSTSHFPTITFHF-EGADFNLPKENYIYT---DSSGIACLAML---PSNGMSIFGNIQQQNYQILYDNERNVLSFAPTVCDTL

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
711			27	70	1.0
1157		96		3	1.0
1419		82		17	1.0
1420	81			18	1.0
1421	59	18		22	1.0
1422		18		81	1.0
1424		80		19	1.0
1426	15	85			1.0
1427		85	15		1.0
1429	89			10	0.999919
1430		89		10	0.999919
1431		10		89	0.999919
1436	10		90		0.999898
1438			90	10	0.999898
1440		10		90	0.999898

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain