SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17983

Length: 967 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene17983 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha-L-fucosidase 1 n=2 Tax=Arabidopsis RepID=FUCO1_ARATH	-	-	0.0	62%
FL-Next	sp=Alpha-L-fucosidase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%
Sma3	Alpha-L-fucosidase 1	-	-	3.528e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Alpha-L-fucosidase.	EC:3.2.1.51	-	3.688e-16	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Other glycan degradation	00511		3.688e-16	%

Source	Gene names
Sma3	At2g28100; B0103C08-B0602B01.14; F24D13.11; FUC1; GSVIVT00022175001; GSVIVT00038518001; GSVIVT00038520001; LOC_Os04g47280; OSJNBa0084K11.7; Os04g0560400; Os09g0520800; OsI_32076; OsJ_30048; P0669G04.14; PHYPADRAFT_209606; POPTRDRAFT_204508; POPTRDRAFT_773

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	alpha-L-fucosidase activity	GO:0004560	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	glycoprotein catabolic process	GO:0006516	Biological Process	-
Sma3	cell adhesion	GO:0007155	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Coagulation factor 5/8 C-terminal type domain	IPR000421	-	-
Sma3	Glycoside hydrolase, family 29	IPR000933	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 29, conserved site	IPR018526	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G28100.1	ATFUC1, FUC1 alpha-L-fucosidase 1 chr2:11974803-11976489 FORWARD LENGTH=506	62%
RefSeq	Arabidopsis thaliana	NP_180377.2	alpha-L-fucosidase 1 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002313533.1	predicted protein, partial [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GW72

Fln msg: Separated hits, possible frame ERROR between 795 and 806, Distance to subject end: 192 aas, your sequence is shorter than subject: 323 - 506

Fln protein: LLRSFPPPLPILPIPSAPQVKWQRGEMAMFLHFGMNTFTDSEWGSGEADPWLFNPTESLDARQWVSVAKEAGFSHIILTAKHHDGFCLWPSAYTNYSVSSSPWKNGTGDVVQDLAEAAREVGIGLGLYLSPWDRHESSYGRTLGYNEYYLALLRELLTK*VSSPGFEPVTFVIF*SIRPWLTGAHVLISYGTIEEVWLDGAKGTDAKSMEYYFDEWFSVIRQLQPEAVIFSDAGPDVRWVGDEGGVAGSTCWSMFNSSDVTIGHxxxxxYSRQGDPYGTNWVPPECDVSIRSGWFWHKNEQPKTLNSLLEIFYESVGRNCMLL

Protein Length: 324

Fln nts: CTACTTCGTTCTTTTCCTCCCCCGTTACCAATTCTTCCCATCCCCTCGGCGCCGCAGGTCAAATGGCAAAGGGGCGAAATGGCCATGTTCCTCCACTTCGGCATGAACACCTTCACAGACTCTGAATGGGGAAGCGGAGAAGCGGATCCCTGGCTCTTCAATCCCACTGAGTCCCTGGATGCTAGGCAATGGGTATCAGTGGCCAAAGAAGCCGGATTCTCCCACATCATACTGACTGCCAAGCACCACGACGGCTTCTGCCTCTGGCCCTCTGCTTACACCAATTACTCCGTCAGCAGCAGCCCCTGGAAGAATGGAACCGGGGACGTAGTGCAGGACTTGGCCGAGGCCGCCAGAGAAGTCGGAATAGGGCTGGGCCTCTACCTTTCCCCATGGGACCGTCACGAGTCCTCCTACGGCCGAACCTTAGGCTACAACGAGTATTACCTTGCCCTGCTGCGCGAGCTCCTCACCAAGTAAGTTTCGAGCCCGGGATTCGAACCCGTGACCTTTGTCATTTTTTAATCGATTCGGCCGTGGTTAACCGGTGCGCATGTGCTGATCAGCTATGGAACCATAGAGGAAGTGTGGTTGGACGGCGCCAAAGGGACGGACGCAAAGTCAATGGAGTATTACTTTGATGAATGGTTTAGTGTGATTCGTCAGCTGCAGCCCGAGGCCGTGATTTTCTCGGACGCCGGGCCCGACGTCAGATGGGTCGGTGACGAGGGCGGGGTAGCGGGTTCCACGTGCTGGTCGATGTTTAACAGCAGCGACGTCACCATTGGCCACACxxxxxxxxxxxxATATTCTCGCCAAGGTGATCCTTATGGTACAAATTGGGTACCTCCAGAATGTGATGTGTCGATAAGATCAGGTTGGTTTTGGCACAAGAATGAGCAACCCAAAACACTAAATTCTTTGTTGGAAATATTTTACGAATCAGTGGGAAGAAATTGTATGCTACTG

Fln Alignment:

Contig17983___SAPQVKWQRGEMAMFLHFGMNTFTDSEWGSGEADPWLFNPTESLDARQWVSVAKEAGFSHIILTAKHHDGFCLWPSAYTNYSVSSSPWKNGTGDVVQDLAEAAREVGIGLGLYLSPWDRHESSYGRTLGYNEYYLALLRELLTK*VSSPGFEPVTFVIF*SIRPWLTGAHVLISYGTIEEVWLDGAKGTDAKSMEYYFDEWFSVIRQLQPEAVIFSDAGPDVRWVGDEGGVAGSTCWSMFNSSDVTIGHTxxxxYSRQGDPYGTNWVPPECDVSIRSGWFWHKNEQPKTLNSLLEIFYESVGRNCMLL
Q8GW72_______________SSQQLQWQLGSMAMFLHFGPNTFTDSEWGTGKANPSIFNPTH-LNASQWVQIAKDSGFSRVILTAKHHDGFCLWPSEYTDYSVKSSQWRNGAGDVVAELASAAKEAGIGLGLYLSPWDRHEQCYGKTLEYNEFYLSQMTELLTK------------------------------YGEIKEVWLDGAKGDGEKDMEYFFDTWFSLIHQLQPKAVIFSDAGPDVRWIGDEAGLAGSTCWSLFNRTNAKIGDTxxxxYSQEGDGYGQDWVPAECDVSIRPGWFWHASESPKPAVQLLDIYYNSVGRNCLFL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain