SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17974

Length: 1040 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17974

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable polygalacturonase non-catalytic subunit JP650 n=3 Tax=Arabidopsis RepID=JP650_ARATH	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Sma3	Polygalacturonase-1 non-catalytic subunit beta, putative	-	-	5.596e-09	-

Source	Gene names
Sma3	AROGP3; At1g23760; At1g60390; At1g70370; BURP12; BURP14; F17O7.9; F5O8.31; GP1; GP2; GP3; GSVIVT00002686001; GSVIVT00002688001; GSVIVT00016109001; JP630; JP650; LOC_Os08g29200; LOC_Os09g16010; OSJNBa0040N23.1; Os08g0380100; Os09g0329000; OsI_15976; OsI_29

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	BURP domain	IPR004873	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G70370.1	PG2 polygalacturonase 2 chr1:26513003-26514998 REVERSE LENGTH=626	47%
RefSeq	Arabidopsis thaliana	NP_001185361.1	putative polygalacturonase non-catalytic subunit JP650 [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002318036.1	predicted protein [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLB0

Fln msg: Distance to subject end: 52 aas, your sequence is shorter than subject: 346 - 666

Fln protein: AFEVVGDNIGVLGVAREAIRHSIVITNNFKGYSEGGNGPIDRFTSYADNGNVPRNEFESYGSNGNGAIQTFTSYADGANVPQDVFKSYGKDANTPLLTFTNYGNSSNSQQDEFKQYGKGSNSADMTFTSYGRNTQFKEYDKNGTRGMTFSSYTNSTTASNSSTIGMGVEAGKFFRENLLVQGSSLPLPNLRDYMPSRSFLPRSMTDKLPNFSSQSLGELVRMFRIPENSSMQGMMAKTLKECERPAVKGEIKKCVTSVEGMAEFAVGILGAKAEVLTTASTAGSGERVQVGEVKGKDGGRVTRSVSCHQSMFPYLVYYCHSVPKVKVYEAALLRNSNANSNPKSKL

Protein Length: 347

Fln nts: GCCTTTGAAGTTGTTGGTGATAACATTGGAGTTTTGGGCGTAGCTAGAGAAGCCATTCGACATTCCATTGTTATCACCAACAACTTCAAAGGCTACAGTGAAGGCGGCAATGGCCCCATTGATCGATTTACATCATATGCAGATAACGGTAACGTTCCCAGAAACGAGTTTGAAAGCTACGGGAGCAATGGAAATGGAGCGATTCAAACCTTCACCAGTTATGCAGACGGCGCCAATGTACCCCAAGACGTTTTCAAGTCTTACGGGAAGGATGCTAATACTCCTCTGCTTACTTTCACCAACTACGGGAATTCGTCCAACTCTCAGCAGGACGAATTCAAGCAGTACGGGAAGGGTTCCAACAGTGCTGACATGACGTTCACCAGCTATGGCCGAAATACCCAATTCAAAGAGTATGATAAGAACGGCACGCGGGGCATGACCTTCTCATCCTACACTAATTCCACTACTGCTTCCAATTCCAGCACGATAGGGATGGGCGTGGAGGCAGGGAAGTTCTTCCGGGAGAATCTGCTGGTCCAAGGTTCGAGTCTCCCTTTGCCTAACCTGAGAGATTACATGCCCAGCAGATCATTCCTGCCTCGATCTATGACCGACAAGCTTCCCAACTTCAGCAGCCAAAGTTTAGGAGAGCTGGTGCGAATGTTCCGCATTCCGGAGAACTCGAGCATGCAGGGGATGATGGCGAAGACGCTGAAAGAGTGCGAACGGCCAGCGGTGAAGGGAGAAATAAAGAAATGCGTGACGTCGGTGGAAGGGATGGCAGAGTTTGCAGTGGGGATATTAGGGGCGAAGGCGGAGGTGTTGACCACAGCGAGCACGGCAGGATCTGGAGAGCGCGTCCAAGTCGGGGAAGTGAAGGGGAAAGATGGAGGTAGAGTGACGAGGTCGGTGTCGTGCCATCAAAGTATGTTTCCATATCTGGTCTACTATTGTCATTCAGTACCCAAAGTCAAGGTGTATGAAGCCGCTCTCCTGCGCAACTCCAACGCCAACTCAAACCCCAAATCCAAGCTGAA

Fln Alignment:

Contig17974___VVGDNIGVLGVAREAIRHSIVITNNFKGYSEGGNGPIDRFTSYADNGNVPRNEFESYGSNGNGAIQTFTSYADGANVPQDVFKSYGKDANTPLLTFTNYGNSSNSQQDEFKQYGKGSNSADMTFTSYGRNTQFKEYD
B8LLB0_______________VTGDEKAVVGDADFQSYHG----KDFKHYKVGASSGTDSFKNYSDGDNEAKDDFKRYGRDGNGRSQVFANYAPQTNIEDEGFATYSSGASAANSDFTNYGSNSNVPDHHFKNYGTDSNAGIQNFKSYADNSNVVKND

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
227	80		20		0.995493
356	20		60		0.99255
357	20			80	0.995493
359		80	20		0.995493
360		80		20	0.995493
367		20	80		0.995493
810	50		50		1.0
821		50		50	1.0
825	33		66		1.0
867		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain