SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17951

Length: 1191 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17951

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carrier protein n=1 Tax=Picea sitchensis RepID=A9NKT1_PICSI	-	-	0.0	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%

Source	ECs	Term	Type	e value	Identity
Sma3	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Tryptophan metabolism	00380		0.0	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053		0.0	%

Source	GOs	Term	Type	Identity
Sma3	small conjugating protein ligase activity	GO:0019787	Molecular Function	-
Sma3	post-translational protein modification	GO:0043687	Biological Process	-
Sma3	regulation of protein metabolic process	GO:0051246	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G50870.2	UBC27 ubiquitin-conjugating enzyme 27 chr5:20699626-20700998 REVERSE LENGTH=203	65%
RefSeq	Arabidopsis thaliana	NP_199900.1	ubiquitin-conjugating enzyme E2 27 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002322290.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKT1

Fln msg:

Fln protein: MLDVSRIQKELTEIERDKKTSGISAKLCGDNDLAHLCGTIAGPMGTPYEGGLFQIDIRLPGAYPFEPPKMQFLTKVWHPNISSQNGAICLDILKDQWSPALTLKTALLSLQALLSAPEPDDPQDAVVAQQYLRDYATYVSTARYWTEAFAKGAYLGMEEKVQKLVEMGFPEDIARTTLEKCDGDENMALEKLCSG*

Protein Length: 197

Fln nts: ATGGGGACACTCGTTCAATTCCACATTTATTCCGCCGTGAACTAGCCAATCACACAGGCTATCGAACTTTGATGATGAGCTTTTTGATGCGTAGTGTGCACCAGCTGCAGATGGACACGGACACCCGTATCTTCCAACAGAGCATTGAGTTTGAGTTCGAAATTTAGAGGGGCAGGGCTTCAGAGCTTTCATTCATCCGGGATTTAACAAGCAACA_-_ATGTTGGACGTTTCGAGGATACAGAAGGAGCTTACTGAGATAGAGAGGGATAAGAAGACATCAGGGATAAGCGCAAAGCTCTGCGGGGACAATGATCTCGCACACCTCTGTGGAACTATCGCAGGACCTATGGGTACCCCTTATGAAGGGGGTCTCTTCCAAATTGACATCCGCTTACCTGGGGCGTATCCATTTGAGCCCCCCAAAATGCAATTTCTGACAAAAGTCTGGCATCCTAATATCAGCAGTCAAAATGGTGCAATATGCTTGGATATTCTGAAAGATCAGTGGAGCCCAGCTCTCACATTGAAGACGGCCTTACTTTCTTTGCAAGCCTTGCTTTCAGCACCAGAACCGGATGATCCTCAGGATGCTGTGGTGGCACAACAGTACCTTAGAGACTACGCAACATATGTGAGCACTGCACGTTACTGGACTGAAGCTTTTGCAAAGGGAGCATATCTTGGAATGGAAGAGAAGGTACAAAAGTTGGTAGAGATGGGATTTCCGGAAGATATAGCGAGAACTACTTTAGAAAAATGTGACGGTGATGAAAACATGGCACTTGAGAAACTCTGTAGTGGTTGA___TATGAAGCTGATACAAATGTTCTAGCTGCTGTTGTCCTTTTGTTTTTCTATACATTGTAGAACCTAAGTCACCTGGTTAGGTTCGTGTTTGAACTCGGTGACAATGGAGTTCAAGAAAAATTTGCCAGGGAAAAATATATATAACAAAATTCGCCTTTAAGTTTGAGAAAATACATAGTCCAAAAGTTTCTAAATTTCAAACTTACGTTTATAGACTTGGTGTACAAACCTGGGACAAAGTTGTGACCTTTATTATTATAACATTATGTTTGAAGTTTTTATTTTATTTTCACTTTAATATAACACAAATTGAATTTGAATTTTATGAATAAATTCAAATCTAATCTAATTTATTGCCGACTATAATCATCAGCGAACATAGTTGGA

Fln Alignment:

Contig17951___MLDVSRIQKELTEIERDKKTSGISAKLCGDNDLAHLCGTIAGPMGTPYEGGLFQIDIRLPGAYPFEPPKMQFLTKVWHPNISSQNGAICLDILKDQWSPXXXXXXXXXXXXXXXXXPEPDDPQDAVVAQQYLRDYATYVSTARYWTEAFAKGAYLGMEEKVQKLVEMGFPEDIARTTLEKCDGDENMALEKLCSG
A9NKT1_______________MLDVSRIQKELTEIERDKKTSGISANLCGDSDLAHLCGTIAGPMGTPYEGGLFQIDIRLPAAYPFEPPKMQFMTKVWHPNISSQNGAICLDILKDQWSPALTLKTALLSLQALLSAPEPDDPQDAVVAQQFRRDYATYVSTARYWTEAFAKGAYLGMEEKVQKLVEMGFPEDMVRTTLEQCGGDENMALEKLCSG

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
623		66		33	0.997452
828	12	87			0.992554
830	87		12		0.992554
832		87	12		0.992554
859		89		10	1.0
927	17			80	1.0
1093			10	90	0.90298
1095		10		90	0.90298
1096			10	90	0.90298
1101			10	90	0.90298
1110		87	12		0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain