SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17889

Length: 2596 nt

UniGene Fasta

>sp_v3.0_unigene17889
CGTCGTGACCTTGGCTGTCACTCAATGTTGAGGATGTCGAAAATCACAATTTTTCGCCGAGGACTTAACAATGAATATGTTCGGTGTTCGTGACGTTTTGAAAAAACGCTTGAATTCGTACAAATTCAGGTATGAATATGTGCTATGATGATAACATAGGATTTTGATACTAAGCATCTACCATTTAAGTACGATATCAATGAACAGGCCGTGGGCGAAAGATTGATTGTATGTATTGCGCCTCCCACCTCCATTGGAGATCACTGCCGTGCATACAAGTGTTCAGGAAGACCAATAAGCATCATGGCGGACGAGGAAACCGAAAACTTCAGTCCCCTTTTAACAGAAGACGGGCACGCAGAACCCAACTCTGAGGATCCAACCCAACAAGCTTCGAATCTTGCAGAAACGACACCGGAGCTTAGCTTGGAGAGGCTTAGCTTGGAGGATAAGTTCCAGCTGATACGCAGTGTGGGGGAGGAGTGCATTCAAGAGAGCGAGTTGAGAACCCTCTTGGAAAAGAAGAAGGACCCTGTCTGCTATGATGGGTTTGAACCCTCTGGTCGGATGCACATAGCCCAGGGAGTCATGAAGGCACTAAATGTGAACAAGTTGACAGATGCTGGCTGCATTGTGAAGTTATGGATTGCAGATTGGTTTGCACAGCTCAATAACAAGATGGGAGGTGATCTGAAAAAGATTCAGACTGTAGGACGTTACATGATTGAAATCTGGAAGGCTGTTGGTATGAAGCTTGACAGAGTGCAGTTCCTGTGGTCGTCAGAGGAAATCAATGCAAGAGCACATGAATATTGGCCACTTGTCATGGAAGTTGCTCGACATAATAAGCTTCCGAGGATTTTAAGGTGTTGCCAAATAATGGGTCGAAGTGAGCAAGATGAATTAACTGCTGCTCAGATATTTTATCCATGCATGCAATGCGCAGATATATTCTTTTTGAAGGCTGATATCTGTCAGCTAGGCATGGATCAACGTAAAGTAAACATGCTAGCAAGGGAGTTTTGCGATGATACAAAAAGAAAGTTCAAGCCAATTATATTATCTCATCACATGCTATCTGGATTACAACAAGGACAAGAGAAGATGTCAAAGAGTGATCCTACGTCTGCTATTTTCATGGAGGATGAAGAGGCAGAAGTGAATTTGAAGATAAAGAAAGCATTTTGCCCTCCAAAGATTGTTGAAGGAAATCCGTGCTTGGAGTACATTAAATACATTAGTTTCCCATGGTTTGGAAAGTTTGAGGTGCTCCGCAATGAAAAAAATGGTGGAAACAAGACCTACTCTACTATGGAAGAGTTGGTTATAGACTATGAAGCAGAAGCATTGCATCCAGCTGATGTCAAACCTGCTCTCTCAAAGTCTTTGAACCGAATATTGCAGCCGGTGCGAGATCATTTCAAAAATAATGCAGAAGCTAAAGAATTGCTCAAGAAAGTGAAGGCATACAGAGTAACAAGGTGACAAGACAGATAAAACAAGTCCTCGAGACACCATTTTGTGTTGTGATCTGAGGTTTTCTGCAAGTCTCTGACCAGCTGACTTGTCTGTTTGACTGGCATAATTTTTAATGGTTGCCACATTCTATTTAACAACACCTGGAAATTTATTTTTGTCATTTTATTTGCCATTGATACTAGAAATTGTTTTCTGTGTAACCATTTGATTCCTACAAGTCTTTTGATAGTTTGATTATCTGCTACAAACTATCAAAACTTATTGAATAATTTGTCGAGAACAATTTTTGTAGTGTTATTATGTTTAGCTAATATCCTTCACCTCATCAGTAATTGCAAATCTGCTATATTATATATCTGTTTTGACTTTGTTTAGCACAAAATGTTGGTGCTATTCTACAGTATGTAGTTTGAGATTTGGATCTGTAATTGAAAAGATTAGGAAACTCAAGAAGCTTCTTTATTACTTTGAAGTGTTGAATATCTGCCACCTATGAAGAGGTTGGACACTGTTTTTACACCTACAAGTCATGTGGCCAGCCGGCCTGAGTTAAAAGCCATGATGGCTCAACCACTAATTGATGCCCCCTTTGTGGGAACGTGCTGGCAATATTGTCGAGGAACTGAACCTTGGTGTGGTAATAACATCACTCCACTTTCACTGACCCGGTTGAGCTCTCATGGCTAAATATTGCAAGGATTGCCTTTAAGTTCATCCTTAAGTGTATTTCATCGACTCATTAGGTATTTGTTTTGTTCGACATTTTCTAACGGCTGGTCCAGATTCTGATCAGATGCAACTCATTCTAAAATGAAGTCAGTGTCGTTCTTTGTTGGGTAGTTGCTGCCAAGATTTGATTCAAATGTCTTGGGGATTGAATTAAGCCTAGGTTAAAAATGAACTTAGATCAGAATGGTTTATTACCAAATATGTGACTTAAAAGTTAAAGCCCAAGAAAATACTGTTTTGTGGCTTATAGTGGGTTGCACAATTTCAGTTCTGTAATAGAGGTATATATGTCTTCAAAACAGGTGTAGTCTGTTTTAGCGGATAATATAACCAGCCGCTGACAATTTCCAAGGAAATCCAAGGACTTGCCATTTTCTATTTTTGGCAT

Ace file of the UniGene sp_v3.0_unigene17889

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tyrosyl-tRNA synthetase n=3 Tax=Zea mays RepID=B6T638_MAIZE	-	-	0.0	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Putative tyrosyl-tRNA synthetase	-	-	2.393e-15	-

Source	Gene names
Sma3	At2g33840; CHLREDRAFT_104512; GSVIVT00000425001; H0901F07.6; MICPUCDRAFT_69880; MICPUN_79172; OJ1136_D12.115-1; OSJNBa0056O06.10; OSJNBb0017I01.20; OSTLU_15823; Os01g0867100; Os02g0722200; Os07g0675400; Os08g0150800; Os08g0191800; Os08g0320000; OsI_04564;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	tyrosine-tRNA ligase activity	GO:0004831	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	tyrosyl-tRNA aminoacylation	GO:0006437	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	CRAL-TRIO domain	IPR001251	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Aminoacyl-tRNA synthetase, class Ic	IPR002305	-	-
Sma3	Tyrosyl-tRNA synthetase	IPR002307	-	-
Sma3		IPR008273	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3		IPR015624	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3		IPR016485	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G33840.1	Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial chr2:14315011-14317329 FORWARD LENGTH=385	69%
RefSeq	Arabidopsis thaliana	NP_850222.1	tyrosyl-tRNA synthetase [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002315391.1	predicted protein, partial [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB56

Fln msg: your sequence is longer than subject: 394 - 188

Fln protein: MADEETENFSPLLTEDGHAEPNSEDPTQQASNLAETTPELSLERLSLEDKFQLIRSVGEECIQESELRTLLEKKKDPVCYDGFEPSGRMHIAQGVMKALNVNKLTDAGCIVKLWIADWFAQLNNKMGGDLKKIQTVGRYMIEIWKAVGMKLDRVQFLWSSEEINARAHEYWPLVMEVARHNKLPRILRCCQIMGRSEQDELTAAQIFYPCMQCADIFFLKADICQLGMDQRKVNMLAREFCDDTKRKFKPIILSHHMLSGLQQGQEKMSKSDPTSAIFMEDEEAEVNLKIKKAFCPPKIVEGNPCLEYIKYISFPWFGKFEVLRNEKNGGNKTYSTMEELVIDYEAEALHPADVKPALSKSLNRILQPVRDHFKNNAEAKELLKKVKAYRVTR*

Protein Length: 395

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTGAGGATGTCGAAAATCACAATTTTTCGCCGAGGACTTAACAATGAATATGTTCGGTGTTCGTGACGTTTTGAAAAAACGCTTGAATTCGTACAAATTCAGGTATGAATATGTGCTATGATGATAACATAGGATTTTGATACTAAGCATCTACCATTTAAGTACGATATCAATGAACAGGCCGTGGGCGAAAGATTGATTGTATGTATTGCGCCTCCCACCTCCATTGGAGATCACTGCCGTGCATACAAGTGTTCAGGAAGACCAATAAGCATC_-_ATGGCGGACGAGGAAACCGAAAACTTCAGTCCCCTTTTAACAGAAGACGGGCACGCAGAACCCAACTCTGAGGATCCAACCCAACAAGCTTCGAATCTTGCAGAAACGACACCGGAGCTTAGCTTGGAGAGGCTTAGCTTGGAGGATAAGTTCCAGCTGATACGCAGTGTGGGGGAGGAGTGCATTCAAGAGAGCGAGTTGAGAACCCTCTTGGAAAAGAAGAAGGACCCTGTCTGCTATGATGGGTTTGAACCCTCTGGTCGGATGCACATAGCCCAGGGAGTCATGAAGGCACTAAATGTGAACAAGTTGACAGATGCTGGCTGCATTGTGAAGTTATGGATTGCAGATTGGTTTGCACAGCTCAATAACAAGATGGGAGGTGATCTGAAAAAGATTCAGACTGTAGGACGTTACATGATTGAAATCTGGAAGGCTGTTGGTATGAAGCTTGACAGAGTGCAGTTCCTGTGGTCGTCAGAGGAAATCAATGCAAGAGCACATGAATATTGGCCACTTGTCATGGAAGTTGCTCGACATAATAAGCTTCCGAGGATTTTAAGGTGTTGCCAAATAATGGGTCGAAGTGAGCAAGATGAATTAACTGCTGCTCAGATATTTTATCCATGCATGCAATGCGCAGATATATTCTTTTTGAAGGCTGATATCTGTCAGCTAGGCATGGATCAACGTAAAGTAAACATGCTAGCAAGGGAGTTTTGCGATGATACAAAAAGAAAGTTCAAGCCAATTATATTATCTCATCACATGCTATCTGGATTACAACAAGGACAAGAGAAGATGTCAAAGAGTGATCCTACGTCTGCTATTTTCATGGAGGATGAAGAGGCAGAAGTGAATTTGAAGATAAAGAAAGCATTTTGCCCTCCAAAGATTGTTGAAGGAAATCCGTGCTTGGAGTACATTAAATACATTAGTTTCCCATGGTTTGGAAAGTTTGAGGTGCTCCGCAATGAAAAAAATGGTGGAAACAAGACCTACTCTACTATGGAAGAGTTGGTTATAGACTATGAAGCAGAAGCATTGCATCCAGCTGATGTCAAACCTGCTCTCTCAAAGTCTTTGAACCGAATATTGCAGCCGGTGCGAGATCATTTCAAAAATAATGCAGAAGCTAAAGAATTGCTCAAGAAAGTGAAGGCATACAGAGTAACAAGGTGA___CAAGACAGATAAAACAAGTCCTCGAGACACCATTTTGTGTTGTGATCTGAGGTTTTCTGCAAGTCTCTGACCAGCTGACTTGTCTGTTTGACTGGCATAATTTTTAATGGTTGCCACATTCTATTTAACAACACCTGGAAATTTATTTTTGTCATTTTATTTGCCATTGATACTAGAAATTGTTTTCTGTGTAACCATTTGATTCCTACAAGTCTTTTGATAGTTTGATTATCTGCTACAAACTATCAAAACTTATTGAATAATTTGTCGAGAACAATTTTTGTAGTGTTATTATGTTTAGCTAATATCCTTCACCTCATCAGTAATTGCAAATCTGCTATATTATATATCTGTTTTGACTTTGTTTAGCACAAAATGTTGGTGCTATTCTACAGTATGTAGTTTGAGATTTGGATCTGTAATTGAAAAGATTAGGAAACTCAAGAAGCTTCTTTATTACTTTGAAGTGTTGAATATCTGCCACCTATGAAGAGGTTGGACACTGTTTTTACACCTACAAGTCATGTGGCCAGCCGGCCTGAGTTAAAAGCCATGATGGCTCAACCACTAATTGATGCCCCCTTTGTGGGAACGTGCTGGCAATATTGTCGAGGAACTGAACCTTGGTGTGGTAATAACATCACTCCACTTTCACTGACCCGGTTGAGCTCTCATGGCTAAATATTGCAAGGATTGCCTTTAAGTTCATCCTTAAGTGTATTTCATCGACTCATTAGGTATTTGTTTTGTTCGACATTTTCTAACGGCTGGTCCAGATTCTGATCAGATGCAACTCATTCTAAAATGAAGTCAGTGTCGTTCTTTGTTGGGTAGTTGCTGCCAAGATTTGATTCAAATGTCTTGGGGATTGAATTAAGCCTAGGTTAAAAATGAACTTAGATCAGAATGGTTTATTACCAAATATGTGACTTAAAAGTTAAAGCCCAAGAAAATACTGTTTTGTGGCTTATAGTGGGTTGCACAATTTCAGTTCTGTAATAGAGGTATATATGTCTTCAAAACAGGTGTAGTCTGTTTTAGCGGATAATATAACCAGCCGCTGACAATTTCCAAGGAAATCCAAGGACTTGCCATTTTCTATTTTTGGCAT

Fln Alignment:

Contig17889___MADEETENFSPLLTEDGHAEPNSEDPTQQASNLAETTPELSLERLSLEDKFQLIRSVGEECIQESELRTLLEKKKDPVCYDGFEPSGRMHIAQGVMKALNVNKLTDAGCIVKLWIADWFAQLNNKMGGDLKKIQTVGRYMIEIWKAVGMKLDRVQFLWSSEEINARAHEYWPLVMEVARHNKLPRILRCCQI
D5AB56_______________MAEEEAQNNSPPSTQDGHEETNSENPAQQPSDLAETRPELNLE-----EKFQLILSVGEECIQESELRTLLERKKDPVCYDGFEPSGRMHIAQGVMKTLNVNKLTDSGCIMKLWIADWFAQLNNKMGGDLKKIQTVGRYMIEIWKAVGMKLDRVQFLWSSEEINSRAHEYWPLVMEVARHNKLPRILRLISV

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
226			25	75	0.996473
228	75		25		0.996473
229			25	75	0.996473
355	20		80		0.995493
812	97		2		0.956062
873		3		96	0.983282
912	3		96		0.98536
1056	92		7		0.999602
1061	92	7			0.999602
1439	96		3		0.98536
1591	75			8	0.99999
1637			16	66	0.988813
1647			11	88	0.923564
1667		11		88	0.923564
1681	88		11		0.923564
1945		33		66	0.997452
2128			25	75	0.996473
2129		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain