SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17857

Length: 1133 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17857

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SNARE domain containing protein	-	-	2.0e-12	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Target SNARE coiled-coil domain	IPR000727	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G79590.1	SYP52, ATSYP52 syntaxin of plants 52 chr1:29947064-29948304 FORWARD LENGTH=233	66%
RefSeq	Arabidopsis thaliana	NP_565213.1	syntaxin-52 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002307952.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NR49

Fln msg:

Fln protein: MASSSDSWMKEFNEASKLADDINARLGERSSLPPSGPETQRHLSAIRRKITILGTRLDSLESLLPKLPSRQPITEKELHRRQDMLVNLRSKSNQMASALNMSRFGNRGDLLGQDNKPVSEINRTAGLDNYGLVGLQRQIMKEQDEGLGKLEETVISTKHIALAVNEELDLQTRLLDNLDQDVDGTGSRLQRAQRRLAVLSKKAKSSCSCMCLLVMVIVLVILAVVIWALIKYL*

Protein Length: 235

Fln nts: ATGGGACATCTCGATCAAATCAAAGAATTATTCCGGGAAAAAATTGAAAGGGGGAAACCTAAAAGTTAAGTGTTGGTTAGCTGTGACGAGCTGGAGGAAAAGGGTCGATAAAACGTGCTTGCAAGATGCAGAAAAGCTACAGGGGATAGCTATCCCTGCGACAGATATCAAGAGGAGGAAGGAGAGAAATTTCTTTTGCATTGAAGAGGATTGAAGAGTATTCAATAGTGAGGAGAGA_-_ATGGCGTCTTCATCGGACTCATGGATGAAGGAATTCAACGAGGCGTCGAAACTTGCAGATGACATAAATGCGAGATTAGGGGAGCGCAGTTCATTGCCCCCATCAGGACCTGAAACACAGCGTCATCTGTCAGCGATCAGGCGTAAGATTACCATCCTCGGCACCAGGCTCGACAGCTTAGAGAGTCTTCTCCCCAAGCTTCCTTCCAGACAACCCATAACGGAAAAGGAATTACATCGACGACAAGACATGCTTGTCAATCTTCGGTCAAAATCAAACCAGATGGCTTCTGCTTTGAACATGTCACGTTTTGGTAACAGGGGTGACTTGCTTGGTCAAGATAACAAACCCGTTTCAGAAATAAACAGAACTGCTGGATTGGATAATTATGGTCTTGTTGGACTCCAGCGGCAAATTATGAAAGAACAAGATGAGGGTCTTGGAAAACTAGAGGAGACTGTAATAAGCACCAAGCACATTGCATTGGCTGTCAATGAAGAATTGGATTTGCAGACTCGGCTTCTTGATAACTTAGACCAAGATGTCGATGGAACAGGCTCACGGCTACAGCGCGCACAAAGGAGGTTGGCGGTGCTGAGCAAAAAGGCAAAGAGTAGTTGCTCCTGCATGTGCTTACTGGTGATGGTTATTGTGCTTGTCATCCTGGCAGTTGTAATTTGGGCACTTATTAAGTACTTGTAA___CTTGGACATGGCTACAGATGTGCTTATATTTTGGTGAAGTTGGTAATGTTTTAAATTGCTGCACAGTTTATTGTGTGATCTTTCTCTTGATTGTGTGTTTATGAATGGTCGGCCTATTGTTCTGACTCCTAATATATTAAAATTTAATAATATTTATTTGTCAATTGTCCAGCTACAGTGACTTGGTCAATTT

Fln Alignment:

Contig17857___MASSSDSWMKEFNEASKLADDINARLGERSSLPPSGPETQRHLSAIRRKITILGTRLDSLESLLPKLPSRQPITEKELHRRQDMLVNLRSKSNQMASALNMSRFGNRGDLLGQDNKPVSEINRTAGLDNYGLVGLQRQIMKEQDEGLGKLEETVISTKHIALAVNEELDLQTRLLDNLDQDVDGTGS
A9NR49_______________MASSADSWVKEFNEASKLADDINARLGERSSLPPSGPETQRHLSAIRRKITILGTRLDSLENLLPKLPSRQPISEKELHRRQDMLVNLRSKSNQMASALNMSRFGNRSDLLGQDNKPVSEINRTTGLDNYGLVGLQRQIMKEQDEGLGKLEETVISTKHIALAVNEELDLHSRLLDSLDQDVDGTNS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
476		20		80	0.995493
651		87		12	0.992554
801	8	91			1.0
824	48		51		1.0
881			86	13	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain