SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17760

Length: 1031 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene17760 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Blue copper protein, putative n=1 Tax=Ricinus communis RepID=B9RBK2_RICCO	-	-	2.0e-34	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Blue copper protein, putative	-	-	5.777e-12	-

Source	Gene names
Sma3	At3g27200; C345ERIPDM; GSVIVT00020533001; OsI_08309; OsJ_07765; P0491E01.30-1; POPTRDRAFT_174402; POPTRDRAFT_917764; RCOM_1548050; RCOM_1677760;

Source	GOs	Term	Type	Identity
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	Plastocyanin-like	IPR003245	-	-
Sma3	Cupredoxin	IPR008972	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G27200.1	Cupredoxin superfamily protein chr3:10043738-10044340 REVERSE LENGTH=174	5.0e-38	57%
RefSeq	Arabidopsis thaliana	NP_566810.1	plastocyanin-like domain-containing protein [Arabidopsis thaliana]	6.0e-38	57%
RefSeq	Populus trichocarpa	XP_002298616.1	predicted protein, partial [Populus trichocarpa]	7.00005e-41	63%

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
613	7		92		0.90298
614		92	7		0.90298
615	7			92	0.90298
617		91		8	0.991528
623	90	10			0.993478
624		90		10	0.993478
691	83	16			0.997339
692		16		83	0.997339
693	16		83		0.997339

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain