SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17614

Length: 1691 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17614

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cinnamoyl-CoA reductase, putative n=1 Tax=Ricinus communis RepID=B9T062_RICCO	-	-	0.0	65%
FL-Next	sp=Tetraketide alpha-pyrone reductase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%
Sma3	Cinnamoyl-CoA reductase	-	-	2.614e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	Dihydrokaempferol 4-reductase.	EC:1.1.1.219	-	5.145e-19	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Flavonoid biosynthesis	00941		5.145e-19	%
Sma3	Biosynthesis of phenylpropanoids	01061		5.145e-19	%
Sma3	Metabolic pathways	01100		5.145e-19	%
Sma3	Biosynthesis of secondary metabolites	01110		5.145e-19	%
Sma3	Cinnamoyl-CoA reductase.	EC:1.2.1.44	-	2.494e-21	-

Source	KEGGs	Term	e value	Identity
Sma3	Phenylpropanoid biosynthesis	00940	2.494e-21	%
Sma3	Biosynthesis of phenylpropanoids	01061	2.494e-21	%
Sma3	Metabolic pathways	01100	2.494e-21	%
Sma3	Biosynthesis of secondary metabolites	01110	2.494e-21	%

Source	Gene names
Sma3	ADH; ADH2; AT1G15950; AT4g35420; At1g09490; At1g09500; At1g15950; At1g25460; At1g51410; At1g68540; At1g80820; B1129H01.17; CAD; CAD1; CAD1-1; CAD1-7; CAD2; CCR; CCR1; CCR2; CCR3; CCR4; CCR6; CCR7; CCRL1; CCRL2; CCRL3; CCRL4; CCRL5; DFR; DFR1; F14J9.15; F1

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	cinnamoyl-CoA reductase activity	GO:0016621	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	regulation of nitrogen utilization	GO:0006808	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	3-beta hydroxysteroid dehydrogenase/isomerase	IPR002225	-	-
Sma3	NmrA-like	IPR008030	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G68540.1	NAD(P)-binding Rossmann-fold superfamily protein chr1:25720066-25721282 FORWARD LENGTH=321	62%
RefSeq	Arabidopsis thaliana	NP_177021.1	putative cinnamoyl-CoA reductase [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002312396.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9CA28

Fln msg:

Fln protein: MSEVCVTGGTGFIAAYLIRNLLQKGYRVRTTVRNPDNVEKFSYLWDLPGAKERLNIVRADLLEEGSFDAAVDGVDGVFHTASPVLVPYNERLKETLIDPCVKGTINVLRSCSRSPSVKRVVLTSSCSSIRYEYNSLERSPLDESHWSNLDYCEKYNLWYAYAKTIGEKEAWKFAEEQGLNLVVVNPSFVVGPILAPEPTSTLSVLLSIIKGENNKVYPNCTIGFVHIDDVVTAHILAMESPSASGRLICSADVAHWKEIVEMLKNKYPMYPIADKCGTEEGNDIPHTINTSKIKNLGLASFKSIEQMFEDSIKSFERRGLLQNLP*

Protein Length: 327

Fln nts: ATGGGGACATACCTTCTTGTCATACTGTTACAGTGATCTTGTTCAAAGCCACATCTCTTATTTTCTTTGTGATATCTGCAATTTCCAAGCTTTCCGTCAACCTCCCTGAAAAG_-_ATGAGCGAGGTATGCGTGACAGGAGGCACAGGCTTCATAGCTGCTTATCTCATTCGTAATCTTCTCCAGAAAGGTTACAGAGTTCGCACTACAGTTCGCAACCCAGATAATGTGGAGAAGTTTAGTTATCTGTGGGATCTACCTGGTGCAAAGGAGAGACTCAACATCGTGAGAGCAGATTTGCTAGAGGAGGGCAGTTTTGATGCAGCAGTAGATGGTGTAGATGGGGTATTCCATACTGCATCACCTGTCTTAGTCCCATATAACGAGCGCTTGAAGGAAACCCTAATAGATCCTTGTGTGAAGGGCACTATCAATGTCCTCAGGTCCTGTTCAAGATCACCTTCAGTAAAGCGGGTGGTGCTTACATCCTCCTGCTCATCAATACGATACGAGTATAATAGTTTAGAGCGTTCCCCGCTGGATGAGTCACATTGGAGCAATTTAGATTATTGCGAGAAGTACAATCTCTGGTATGCATATGCAAAAACTATTGGTGAGAAAGAGGCCTGGAAGTTCGCAGAGGAGCAGGGTCTCAATCTAGTCGTGGTGAACCCCTCATTTGTTGTTGGGCCAATTCTAGCCCCTGAACCTACCAGCACTCTTTCGGTACTGCTGAGCATAATTAAGGGAGAAAATAACAAGGTATACCCAAATTGCACGATTGGTTTTGTTCACATAGATGATGTAGTAACAGCACATATTCTGGCCATGGAGTCTCCATCAGCGTCGGGGAGATTAATCTGCTCTGCTGATGTTGCTCATTGGAAAGAAATTGTAGAGATGTTGAAGAACAAATACCCAATGTACCCAATTGCAGACAAATGTGGAACGGAGGAAGGAAATGATATACCTCACACTATCAACACTAGTAAGATTAAAAACTTGGGACTTGCCAGCTTTAAAAGCATAGAGCAGATGTTTGAGGACAGCATTAAAAGTTTTGAAAGGAGGGGCTTGCTGCAGAATCTGCCTTAG___CATCATAGACACAATGGAAGATTTTTCTTTCACTAGTTTGTCTGAGTGATCATGATGTCTCCTACTTTTAATAAACTGGCAGAACAATGTCTTAGTCGCATCGATCCGAGCTATACTTGGAAGAATTTCACCCTGGAGGAGCAGGCCAAGGTCATCGTGGCTGCCAGAAGCAATAACGAGATGGATGCCAGCAAGCTCAAGAATGAGTTCCCTGAACTCCTGCCCATCAAGGAATCGCTTATTAAGTATGTATTCGAACCAAATCAGAAAGTCCGCAGGGCTTAGGTGAGATTCGATCTCTGGATCTCCTGTTGAGTGAATGGTCTGGTGTATTTCAGTGAAAAGAAGGGGAAGCTATTTAAGTTAGGGCTTTTGGCTATCAGGCTTCTTTTTTCTTCTCTAAATAACTTTTATTACTTTTCATTTGATTTTATTCGAATTGAGAGCTGTCCTCTGGATCTAGATGTATTAGCCTTAGATTTAATATCCAGACATTGAGCTCTTATCTCTGATCTATGCTGATTCAAAGATATAGATCTATTGTTGTTGCGATTATTGTATCTTCTTTCATTTTTCAATGGAAAAAAATCTCGAATGTAA

Fln Alignment:

Contig17614___MSEVCVTGGTGFIAAYLIRNLLQKGYRVRTTVRNPDNVEKFSYLWDLPGAKERLNIVRADLLEEGSFDAAVDGVDGVFHTASPVLVPYNERLKETLIDPCVKGTINVLRSCSRS-PSVKRVVLTSSCSSIRYEYNSLERSPLDESHWSNLDYCEKYNLWYAYAKTIGEKEAWKFAEEQGLNLVVVNPSFVVGPILAPEPTSTLSVLLSIIKGENNKVYPNCTIGFVHIDDVVTAHILAMESPSASGRLICSADVAHWKEIVEMLKNKYPMYPIADKCGTEEGNDIPHTINTSKIKNLGLASFKSIEQMFEDSIKSFERRGLL
Q9CA28_______________MSEYLVTGGTGFIASYIIKSLLELGHTVRTTVRNPRDEEKVGFLWEFQGAKQRLKILQADLTVEGSFDEAVNGVDGVFHTASPVLVPQDHNIQETLVDPIIKGTTNVMSSCAKSKATLKRIVLTSSCSSIRYRFDATEASPLNESHWSDPEYCKRFNLWYGYAKTLGEREAWRIAEEKGLDLVVVNPSFVVGPLLGPKPTSTLLMILAIAKGLAGE-YPNFTVGFVHIDDVVAAHVLAMEEPKASGRIICSSSVAHWSEIIELMRNKYPNYPFENKCSNKEGDNSPHSMDTRKIHELGFGSFKSLPEMFDDCIISFQKKGLL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
627	83		16		0.994512
1136	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain