SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17514

Length: 1386 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17514

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutathione S-transferase-like protein n=13 Tax=Picea sitchensis RepID=C0PR46_PICSI	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Sma3	Glutathione S-transferase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glutathione transferase.	EC:2.5.1.18	-	3.08286e-44	-

Source	KEGGs	Term	e value	Identity
Sma3	Glutathione metabolism	00480	3.08286e-44	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980	3.08286e-44	%
Sma3	Drug metabolism - cytochrome P450	00982	3.08286e-44	%

Source	Gene names
Sma3	AcGSTF1; At2g30860; At2g30870; At3g03190; At3g62760; B1039D07.6; B67C16.10; ERD13; F26K9_190; F7F1.8; GST1; GST2; GST2a; GST2b; GST2c; GST3; GST4; GST6; GSVIVT00015524001; GSVIVT00018860001; GSVIVT00018861001; GSVIVT00023502001; GSVIVT00023540001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	glutathione transferase activity	GO:0004364	Molecular Function	-
Sma3	glutathione peroxidase activity	GO:0004602	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	glutathione binding	GO:0043295	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	toxin catabolic process	GO:0009407	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G30870.1	ATGSTF10, ERD13, ATGSTF4, GSTF10 glutathione S-transferase PHI 10 chr2:13141490-13142392 FORWARD LENGTH=215	51%
RefSeq	Arabidopsis thaliana	NP_180644.1	glutathione S-transferase ERD13 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002327563.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQV4

Fln msg: Separated hits, possible frame ERROR between 681 and 812, your sequence is longer than subject: 293 - 216

Fln protein: MAAIKVHGFHASTATNMVLCCLNEK*VEYDFVLVDLLTGAHKKPQYLALNVRKTRFSFLRSL*HIKYSVHNILFISDCVMMQPFGVVPTIQDGDLTLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxESRAILRYLAQKFKGQGTDLLGSTLSEEALVYQWCEVEGQSFNPPVSTIVSQILVVPRRGGSTDEAAVEMNIEKLGKVLDIYEERLSKSKYLAGDFFSLDDLQHLPHTHYLVNACGKGDLISSRKHVNAWWEDISSRPTWQKVAENMKFN*

Protein Length: 294

Fln nts: ACGTCAATTTTAAATCCGTTTTCCTGACATCGTTCTATCCATACAGGCAATGGGGCTCCCGAGCAACACCGTCCCGGAAATGGACGATCCGAGCAGCTGGAATGTGAAGAATTTATTGAAAATATCGGAGGATATGCTCAACCAGAAGAGCTTGGAGACCATTCCCTTCGGCGGCAAGAGACTCCTCTCACAGACCAATGCCGAGCGCCTGGAGTGGTTCACGGACGAGCTCATTCTGGAGCACAGAAGTCGCGCAATAAGGGAAACCCCTACAGTTGTTCTCAAGCAGAGCCCAGCCACAACTGCCACCACCACCGCTGCTTCTTCTCCTTATCCTTCCTCTTCTTCGTTTTCAGAATCTGAGAGGGAGAAACAGAGAGAGATTCA_-_ATGGCGGCGATCAAAGTGCATGGTTTTCACGCCTCCACGGCCACCAATATGGTGTTGTGCTGTTTGAATGAGAAATAAGTTGAGTACGACTTCGTCCTGGTCGATCTCCTTACTGGTGCTCACAAGAAACCCCAATATCTGGCTCTCAATGTAAGAAAAACCCGCTTCAGTTTTCTGCGATCTCTCTGACATATCAAATACTCTGTTCATAATATACTTTTTATTTCTGATTGTGTTATGATGCAGCCATTTGGGGTAGTACCCACAATCCAAGATGGGGATCTCACCTTATTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGAGTCAAGAGCCATTCTCAGGTATTTGGCCCAAAAGTTCAAGGGACAGGGCACAGATCTCTTGGGAAGTACCCTGTCTGAAGAAGCCCTGGTTTATCAATGGTGTGAGGTGGAAGGGCAGTCGTTCAATCCCCCTGTTTCGACCATAGTTTCTCAAATCCTGGTAGTCCCAAGGAGGGGAGGCAGCACAGACGAAGCAGCAGTGGAGATGAATATAGAGAAGCTGGGAAAAGTGTTGGATATTTACGAAGAAAGGTTATCAAAGAGCAAGTACTTGGCCGGTGATTTCTTCAGCTTGGATGACCTCCAACATCTGCCCCATACTCACTACCTCGTCAACGCTTGCGGAAAGGGTGATCTCATATCTTCCAGGAAGCATGTGAATGCATGGTGGGAGGACATTTCCAGTCGCCCTACCTGGCAGAAAGTTGCAGAAAATATGAAATTTAATTGA___GAGTAAAGATTTTATGTGTATCTATGTATGCATGGCAGGCAGTAATTAAATAAAATGTGGGGATCCTATTTATATGTAACGATCTCTCATACAGGTTAATAAAGCTTTACTTCTCAGTCGAA

Fln Alignment:

Contig17514___MAAIKVHGFHASTATNMVLCCLNEK*VEYDFVLVDLLTGAHKKPQYLALNVRKTRFSFLRSL*HIKYSVHNILFISDCVMMQPFGVVPTIQDGDLTLFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxESRAILRYLAQKFKGQGTDLLGSTLSEEALVYQWCEVEGQSFNPPVSTIVSQILVVPRRGGSTDEAAVEMNIEKLGKVLDIYEERLSKSKYLAGDFFSLDDLQHLPHTHYLVNACGKGDLISSRKHVNAWWEDISSRPTWQKVAENMKF
A9NQV4_______________MAAIKVHGYHASTATVMVLCCLNEKEVEYELVLVDLPTGAHKKPEYLALN--------------------------------PFGVVPTIQDGDLTLYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxESRAIIRYLAKKFQGQGTDLLGSTLSEEALVYQWCEVEGQSFNPPALSIVSQILVVPMRGGSTDEAAVEMNVEKLEKVLDIYEERLSKSKYLAGDFFSLADLQHLPCTHYLVNACGKGDLISSRKHVNAWWEDISSRPTWKKVAENMKF

SNPs (tot: 3)

Position	A %	G %	Probability
780	88	11	0.923564
787	90	10	0.90298
1256	81	18	0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain