SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17484

Length: 2753 nt

UniGene Fasta

>sp_v3.0_unigene17484
GGGTTTAAAATAACATCATCCCCACCTGAAAAGGGGAAGGGATCAATACTTGTAGTAATGAATGGATGTTTGACTGGCGATAGAAAGCGCTCATTACCCTCCATTTCCCTGTGCTCGTCTTTAGGAGAAGAGGACGATGAGACCACCATCTGTTAACACAAGAGCAGAGAGTTGCAGGGTCGCTAAAGAATCCGGACTGCAGTGAGCAGACCGAGGCGTTCCAATGCATATGATGCGGCGTATCAAGAGCATTGCGTCGGGCCGATCCTCCATCTCAGATCCGGGAGGAGATGGTGGCATAAAAAGGGCTAAATTTGAACCTGAAACAGAAGTGGAGGCCGTTGGGTTATCTAAGAATGTGGCAGGTACAAGTGAAGTCTCGGAGCAGCATATGGCTGTTGTTTCTGTAGAGCCCTCTGTGGTTGCACATGGTACTTCAGACATGGCAGCAGTTGCAAAAACTAGAAATTCTGGTATTGACCAACTTCCAAAGGAAATGCATGATATGAAAATAAGGGATGATAAAGGCAAGAATCCAGATGACAAGGAAATTGAGGCCACAGTTGTCAATGGCAATGGGACGGAGACTGGCCACATAATTTCAACAACAATAGGTGGTCAAAATGGGCAGCCAAAACAGACCATCAGATACAGGGCAGAACGTATTGTGGGCACTGGGTCATTTGGTATTGTTTTCCAGGCCACATGCTTAGAAACTGGAGAGGCTGTTGCCATAAAAAAAGTGCTGCAGGATAAGAGATACAAGAATAGAGAACTGCAAATTATGCGCATGCTTGACCATCCTAATATTGTTCAACTCAAACATTGTTTCTTTTCAACTACGGACAAAGATGAATTATATCTCAACCTTGTATTGGAGTATGTACCTGAAACAGTGTATCGAGTTACAAAATACTATAGTAGGATGAACCAACGTATGCCATTGATATATGTCAAACTATACACCTATCAGATATGTCGTTCTCTGGCTTACATCCATGGTGTTGTTGGCGTTTGTCATCGTGATATAAAACCTCAAAACTTATTGGTTGACCCCCATACTCACCAGCTTAAACTTTGTGACTTTGGCAGTGCCAAGAAGTTGGTGAAAGGGGAGCCCAATATATCATATATATGTTCGCGTTATTACAGAGCTCCAGAACTTATTTTTGGAGCTACAGAGTATACTACGGCAATAGATATATGGTCATTGGGTTGCGTCTTAGCAGAATTGCTCCTTGGACTGCCTCTGTTTCCTGGAGAAAGTGGCGTTGACCAGTTGGTGGAGATCATCAAGGTTCTGGGGACTCCAACACGAGAGGAGATTAAGTGCATGAATCCAAATTATACAGAGTTTAAATTCCCTCAAATTAAAGCACATCCATGGCACAAGGTATTTCACAAACGCACACCTCCAGAAGCGGTGGATCTTGTATCAAGATTGCTCCAGTATTCTCCAAACCTGCGCTGTACTGCTCTGGAGGCTTGTGCACATCCTTTCTTTGATGAGCTGCGTGATCCCAATACACAATTACCAAATGCTCATCCTCTGCCACTTCTCTTTGACTTTACACCCCAAGAGTTGCAAGGAGCCTCACCAGAGTTATCTCATCGACTTGTGCCTGAGCATGCGAGGAAGCAAAATCCGTCATTAACGGTGTAATTTCAATATATATTTAAAGAAAACATGTCAGTCATTGTGACAAACAACTTAATGAGGCTATCTCCCATTACAATTCAAAACATCCTTTGTCAGGGACAAAAGTGGAGCTTATCAGTGTTAGATTAACCACTGGAGAATTCTATATCAAGTGGGAGGTACAAAGATATTAGCAGCACATATCTCAGTATTGAACCGTGTTGTCAGAGATAGCTAAAATGTGTGGATTGAAAATTTACCTGTACCTTCTTACTTTTTCTCCATTTGTAATATGGGCTTTTTTGTGGTCTTCACATTCATCATAGTTTTGAGTCCCCTGCTGAGATGGCATCCAGGAGATGGTCAGTTATAGAAGACATATATGTTTTGGTAGACAATTGTCGTCTTTTGTAATATGCAATGAAGGCAGATGGAATGGACATGGGCATTATATCATGAAGGGGGCCAGAACAAAGGTCCATGAATTTACCTGATGGAAGATGGCAATTTGATTTACAGATGGTTGGTTTCATGTGAGAAGGTTGCTAAATTTCACTTTAGATTTTAAGCAGATGATATTTGTTGTAATATTTGATGTTTCAACATTTCATGAACAGATATATAGGGTAATATTATAATTCTACGTTGAGGCCTTCAAAATTTGACGAACTAGTCATCTTGAAGAAAAAGCTGGAAGTCATGGTGTTACTGTAGTATGTTTTCTGTCGTGCAGGAACTTTGATGTATCCGATGATTGAAGCACTTCATTCCTGTTGCTTTTTCTTTCTCCCGAGGTGTTTGTTTGAGTGTGGGGCATAAATATTCAGAGACCATTAAATTATGAGCGCATATTTAATCTTTTGGATTTAGTATATAAGAATCATCTGAGATACGAGGTTTATTTGAGCTTTAACCCAGGGTCTAAAAAGCCAGATTGTCTTTATCCTTTAAATTCCGAGCTCAGCAGGGTAATCTATGGTCTGTTTGTGCTTCTTTCTTTCAAAATTTTGTTTTGTAACTCTTGTTCTATGAGCTCTGTATAATCAAAGTTGCAACAGAGCAGACTTAAGTATAATCTATTTGTGTTTTGCGGTTTAGCAAGTTTACAAACATT

Ace file of the UniGene sp_v3.0_unigene17484

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GSK3/shaggy-like protein kinase n=1 Tax=Selaginella moellendorffii RepID=D8SX29_SELML	-	-	0.0	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Glycogen synthase kinase-3 beta, putative	-	-	1.759e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	2.929e-15	-
Sma3	[Tau protein] kinase.	EC:2.7.11.26	-	5.849e-14	-

Source	Gene names
Sma3	ASK1; ASK10; ASK2; ASK3; ASK4; ASK5; ASK6; ASK7; ASK8; ASK9; AT1G06390; AT1G09840; AT3G05840; AT4G18710; At1g06390; At1g09840; At1g57870; At2g30980; At3g05840; At3g61160; At4g00720; At4g18710; At5g14640; At5g26751; BIN2; CHLREDRAFT_114692; DWF12; F10A16.1

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	polygalacturonase activity	GO:0004650	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	-
Sma3	regulation of protein localization	GO:0032880	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Zinc finger, RING-CH-type	IPR011016	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G14640.1	ATSK13, SK13 shaggy-like kinase 13 chr5:4719350-4721772 REVERSE LENGTH=410	82%
RefSeq	Arabidopsis thaliana	NP_196968.2	Shaggy-related protein kinase epsilon [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002320754.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUP4

Fln msg: your sequence is longer than subject: 480 - 370

Fln protein: MHMMRRIKSIASGRSSISDPGGDGGIKRAKFEPETEVEAVGLSKNVAGTSEVSEQHMAVVSVEPSVVAHGTSDMAAVAKTRNSGIDQLPKEMHDMKIRDDKGKNPDDKEIEATVVNGNGTETGHIISTTIGGQNGQPKQTIRYRAERIVGTGSFGIVFQATCLETGEAVAIKKVLQDKRYKNRELQIMRMLDHPNIVQLKHCFFSTTDKDELYLNLVLEYVPETVYRVTKYYSRMNQRMPLIYVKLYTYQICRSLAYIHGVVGVCHRDIKPQNLLVDPHTHQLKLCDFGSAKKLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSLGCVLAELLLGLPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKRTPPEAVDLVSRLLQYSPNLRCTALEACAHPFFDELRDPNTQLPNAHPLPLLFDFTPQELQGASPELSHRLVPEHARKQNPSLTV*

Protein Length: 481

Fln nts: GGGTTTAAAATAACATCATCCCCACCTGAAAAGGGGAAGGGATCAATACTTGTAGTAATGAATGGATGTTTGACTGGCGATAGAAAGCGCTCATTACCCTCCATTTCCCTGTGCTCGTCTTTAGGAGAAGAGGACGATGAGACCACCATCTGTTAACACAAGAGCAGAGAGTTGCAGGGTCGCTAAAGAATCCGGACTGCAGTGAGCAGACCGAGGCGTTCCA_-_ATGCATATGATGCGGCGTATCAAGAGCATTGCGTCGGGCCGATCCTCCATCTCAGATCCGGGAGGAGATGGTGGCATAAAAAGGGCTAAATTTGAACCTGAAACAGAAGTGGAGGCCGTTGGGTTATCTAAGAATGTGGCAGGTACAAGTGAAGTCTCGGAGCAGCATATGGCTGTTGTTTCTGTAGAGCCCTCTGTGGTTGCACATGGTACTTCAGACATGGCAGCAGTTGCAAAAACTAGAAATTCTGGTATTGACCAACTTCCAAAGGAAATGCATGATATGAAAATAAGGGATGATAAAGGCAAGAATCCAGATGACAAGGAAATTGAGGCCACAGTTGTCAATGGCAATGGGACGGAGACTGGCCACATAATTTCAACAACAATAGGTGGTCAAAATGGGCAGCCAAAACAGACCATCAGATACAGGGCAGAACGTATTGTGGGCACTGGGTCATTTGGTATTGTTTTCCAGGCCACATGCTTAGAAACTGGAGAGGCTGTTGCCATAAAAAAAGTGCTGCAGGATAAGAGATACAAGAATAGAGAACTGCAAATTATGCGCATGCTTGACCATCCTAATATTGTTCAACTCAAACATTGTTTCTTTTCAACTACGGACAAAGATGAATTATATCTCAACCTTGTATTGGAGTATGTACCTGAAACAGTGTATCGAGTTACAAAATACTATAGTAGGATGAACCAACGTATGCCATTGATATATGTCAAACTATACACCTATCAGATATGTCGTTCTCTGGCTTACATCCATGGTGTTGTTGGCGTTTGTCATCGTGATATAAAACCTCAAAACTTATTGGTTGACCCCCATACTCACCAGCTTAAACTTTGTGACTTTGGCAGTGCCAAGAAGTTGGTGAAAGGGGAGCCCAATATATCATATATATGTTCGCGTTATTACAGAGCTCCAGAACTTATTTTTGGAGCTACAGAGTATACTACGGCAATAGATATATGGTCATTGGGTTGCGTCTTAGCAGAATTGCTCCTTGGACTGCCTCTGTTTCCTGGAGAAAGTGGCGTTGACCAGTTGGTGGAGATCATCAAGGTTCTGGGGACTCCAACACGAGAGGAGATTAAGTGCATGAATCCAAATTATACAGAGTTTAAATTCCCTCAAATTAAAGCACATCCATGGCACAAGGTATTTCACAAACGCACACCTCCAGAAGCGGTGGATCTTGTATCAAGATTGCTCCAGTATTCTCCAAACCTGCGCTGTACTGCTCTGGAGGCTTGTGCACATCCTTTCTTTGATGAGCTGCGTGATCCCAATACACAATTACCAAATGCTCATCCTCTGCCACTTCTCTTTGACTTTACACCCCAAGAGTTGCAAGGAGCCTCACCAGAGTTATCTCATCGACTTGTGCCTGAGCATGCGAGGAAGCAAAATCCGTCATTAACGGTGTAA___TTTCAATATATATTTAAAGAAAACATGTCAGTCATTGTGACAAACAACTTAATGAGGCTATCTCCCATTACAATTCAAAACATCCTTTGTCAGGGACAAAAGTGGAGCTTATCAGTGTTAGATTAACCACTGGAGAATTCTATATCAAGTGGGAGGTACAAAGATATTAGCAGCACATATCTCAGTATTGAACCGTGTTGTCAGAGATAGCTAAAATGTGTGGATTGAAAATTTACCTGTACCTTCTTACTTTTTCTCCATTTGTAATATGGGCTTTTTTGTGGTCTTCACATTCATCATAGTTTTGAGTCCCCTGCTGAGATGGCATCCAGGAGATGGTCAGTTATAGAAGACATATATGTTTTGGTAGACAATTGTCGTCTTTTGTAATATGCAATGAAGGCAGATGGAATGGACATGGGCATTATATCATGAAGGGGGCCAGAACAAAGGTCCATGAATTTACCTGATGGAAGATGGCAATTTGATTTACAGATGGTTGGTTTCATGTGAGAAGGTTGCTAAATTTCACTTTAGATTTTAAGCAGATGATATTTGTTGTAATATTTGATGTTTCAACATTTCATGAACAGATATATAGGGTAATATTATAATTCTACGTTGAGGCCTTCAAAATTTGACGAACTAGTCATCTTGAAGAAAAAGCTGGAAGTCATGGTGTTACTGTAGTATGTTTTCTGTCGTGCAGGAACTTTGATGTATCCGATGATTGAAGCACTTCATTCCTGTTGCTTTTTCTTTCTCCCGAGGTGTTTGTTTGAGTGTGGGGCATAAATATTCAGAGACCATTAAATTATGAGCGCATATTTAATCTTTTGGATTTAGTATATAAGAATCATCTGAGATACGAGGTTTATTTGAGCTTTAACCCAGGGTCTAAAAAGCCAGATTGTCTTTATCCTTTAAATTCCGAGCTCAGCAGGGTAATCTATGGTCTGTTTGTGCTTCTTTCTTTCAAAATTTTGTTTTGTAACTCTTGTTCTATGAGCTCTGTATAATCAAAGTTGCAACAGAGCAGACTTAAGTATAATCTATTTGTGTTTTGCGGTTTAGCAAGTTTACAAACATT

Fln Alignment:

Contig17484___IEATVVNGNGTETGHIISTTIGGQNGQPKQTIRYRAERIVGTGSFGIVFQATCLETGEAVAIKKVLQDKRYKNRELQIMRMLDHPNIVQLKHCFFSTTDKDELYLNLVLEYVPETVYRVTKYYSRMNQRMPLIYVKLYTYQICRSLAYIHGVVGVCHRDIKPQNLLVDPHTHQLKLCDFGSAKKLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWXXXXXXXXXXXXXXXXXXXXXVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKRTPPEAVDLVSRLLQYSPNLRCTALEACAHPFFDELRDPNTQLPNAHPLPLLFDFTPQELQGASPELSHRLVPEHARKQNPSLTV
A9NUP4_______________MEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNIVCLKHCFFSTTDKDELYLNLVLEYVPETVYRVAKHYSRMNQRMPLLYVKLYTYQICRALAYIHGGIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSMGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKPQELKGATPDLLIKLIPEHARKQCPFLNL

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
346		80		20	0.995493
389	16	83			0.994512
392		83		16	0.994512
488		75	25		0.996473
496			80	20	0.995493
499	80			20	0.995493
562		11		88	0.923564
660	16	83			0.994512
661	83			16	0.994512
664	83		16		0.994512
669			16	83	0.994512
670		16		83	0.994512
674	16		83		0.994512
675			83	16	0.994512
677	83	16			0.994512
679	16			83	0.994512
680	16		66		0.988813
683	20			80	0.995493
2554	87	12			0.992554
2556	16	83			0.994512
2557		83	16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain