SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17320

Length: 1161 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17320

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Xyloglucan endotransglycosylase n=2 Tax=Asteroideae RepID=D9I0J0_DAHPI	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Xyloglucan endotransglycosylase	-	-	1.28303e-41	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	0.0	-

Source	Gene names
Sma3	19-1-5; AoXET1; AoXET2; At1g11545; At2g06850; At2g14620; At3g23730; At4g03210; At4g13090; At4g14130; At4g25810; At4g25820; At4g30270; At4g30280; At4g37800; At5g13870; At5g48070; At5g57530; At5g57540; At5g57550; At5g57560; At5g65730; EXGT; EXGT-A1; EXGT-A4

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular glucan metabolic process	GO:0006073	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to mechanical stimulus	GO:0009612	Biological Process	-
Sma3	response to low light intensity stimulus	GO:0009645	Biological Process	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to brassinosteroid stimulus	GO:0009741	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G37800.1	XTH7 xyloglucan endotransglucosylase/hydrolase 7 chr4:17775703-17777372 REVERSE LENGTH=293	61%
RefSeq	Arabidopsis thaliana	NP_195494.1	xyloglucan:xyloglucosyl transferase [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002310324.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD91

Fln msg:

Fln protein: MAGQRNWFKRIEFIVIFVVCLNSVSARPASFAEDFKVTWADDHVKTRSDNNSIDLILDQNSGAGFASKNQYMFGLVSMNIKLVAGDSAGTVTAFYMSSDKEEVRDELDFEFLGNRSGQPYTVQTNVFALGKGGREQRVNLWFDPSLEFHRYSILWNHYHIVFSVDDIPIRVYKNNEAKGVPFPRNQSMGIFSTLWEADNWATRGGLEKIDWSKAPFVASYRGFEIESCQYPGNASCVVNTSNWWEGLSYSSLRPNQARLYKWVRTNYMIYDYCKDTPRYPVLPSECTAGV*

Protein Length: 292

Fln nts: ATGGGGATTCATGACCTGGACTTTGGGTTTTTTGGTGAAAGTTGAGTCGTGACCCTGAATGTCACTCAATAAATCTCCAGAGTGAACTAGGCCGTAACGCAGTGGGCCTTTTTCCGGTCTGTTGTTGTGGGTAATACG_-_ATGGCCGGGCAAAGGAATTGGTTCAAGAGAATCGAGTTTATTGTTATATTCGTGGTTTGCTTAAACTCTGTTTCTGCACGCCCGGCATCATTTGCAGAGGATTTTAAAGTGACGTGGGCAGATGACCATGTCAAAACAAGGTCTGATAACAACTCCATCGATCTCATCCTGGATCAGAATTCAGGTGCAGGTTTTGCCTCCAAGAATCAGTACATGTTTGGACTTGTAAGCATGAACATCAAGCTTGTGGCAGGTGATTCTGCAGGGACAGTCACTGCCTTTTATATGAGCTCGGACAAGGAGGAAGTGCGAGATGAATTGGATTTTGAGTTTCTGGGGAACAGATCAGGCCAGCCTTATACAGTCCAAACAAATGTGTTTGCTCTCGGGAAGGGTGGCCGCGAGCAGAGAGTGAATCTCTGGTTCGACCCTTCGCTGGAATTTCACAGATATTCCATCCTCTGGAACCATTACCATATTGTGTTTTCTGTAGATGACATCCCCATTAGGGTTTACAAGAACAACGAAGCAAAAGGCGTTCCATTTCCGAGGAATCAGAGCATGGGGATCTTCTCTACTCTCTGGGAAGCCGATAACTGGGCGACGAGGGGCGGGCTGGAAAAGATTGACTGGAGCAAGGCGCCATTTGTTGCCTCCTACAGGGGATTTGAGATCGAATCCTGCCAGTACCCGGGCAACGCGAGCTGCGTGGTTAATACCAGCAATTGGTGGGAAGGGTTGAGTTACAGCAGCCTCAGACCAAATCAAGCGAGGTTGTACAAATGGGTGAGAACGAATTACATGATTTATGATTATTGTAAGGACACGCCCAGGTATCCAGTGCTGCCCTCTGAGTGCACTGCTGGTGTATGA___TCGGCCACTCCCCCAAATAAGCATTGGGCTAAATTTTCGAAATATATTCGAATCTGATGAATAGTAGTTGTAAATTTAGGAAATATATTTTGGAATTCAATGAATAATTTAAGGTTGAAATAATCATCGAATATTCCCACCGATAAAAAC

Fln Alignment:

Contig17320___VIFVVCLNSVSARPASFAEDFKVTWADDHVKTRSDNNSIDLILDQNSGAGFASKNQYMFGLVSMNIKLVAGDSAGTVTAFYMSSDKEEVRDELDFEFLGNRSGQPYTVQTNVFALGKGGREQRVNLWFDPSLEFHRYSILWNHYHIVFSVDDIPIRVYKNNEAKGVPFPRNQSMGIFSTLWEADNWATRGGLEKIDWSKAPFVASYRGFEIESCQYPGNASCVVNTSNWWEGLSYSSLRPNQARLYKWVRTNYMIYDYCKDTPRYPVLPSEC
D5AD91_______________IIVMLCSFVVGSQCAAFNDFFYPSWALDHVMSQGD--LLQLKLDHASGAGFASKSTYLFGKANVQIKLVPGDSAGTVTAFYMSSQGDQ-HDEFDYEFLGNTSGEPYVVQTNVYSKGVGNREQRIYLWFDPTANFHSYSFLWNRQQAVFFVDDVPIRVFSNNEKRGVPYPQTRPMGIFSSIWNADDWATQGGRVKTDWSHAPFLSTYKNFNIDACKYTTGSSC----SSWWDQPAYASLNEKQSMQLKWVHEKYMIYDYCKDSVRFPTPPAEC

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
205		10		90	0.90298
595	90		10		0.90298
596		10		90	0.90298
597	10	90			0.90298
636		88		11	0.923564
642		11		88	0.923564
975		58		41	1.0
999			8	91	1.0
1035	6			93	0.999364
1108		81		18	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain