SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17236

Length: 1797 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17236

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ribosomal protein L3 [Solanum lycopersicum]	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L3	IPR000597	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G43170.1	ARP1, emb2207, RPL3A, RP1 ribosomal protein 1 chr1:16266992-16268631 FORWARD LENGTH=389	85%
RefSeq	Arabidopsis thaliana	NP_001185148.1	60S ribosomal protein L3-1 [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002306708.1	predicted protein [Populus trichocarpa]	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZI7

Fln msg:

Fln protein: MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPRDDPSKPCKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTLIETPPMVIVGVVAYIKTPRGLRTLNTVWAQHLSEEVRRRFYKNWYRAKKKAFTKYAKKYDSEDGKKEIQAELEKMKKYATVIRVLAHTQIKKMKGLKQKKAHLMEIQVNGGTIAQKVDYAYNFFEKQVPIDALFQKDEMIDVIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKIGKSDQESHKAMTEFDRTEKDITPMGGFPHYGVVKDDYIMIRGCCMGTKKRVVTLRQSLLKQTSRTALEEIKLKFIDTSSKFGHGRFQTTQEKAKIFGKLKA*

Protein Length: 391

Fln nts: ATGGGGACTCCTAACCATTTACTCTGCTAAAGAGAAAAGGGTATTTGGGCTCTAGGGTTTTTGGGTTGGTCTTAGGGTTTGTGTCAACATTAGGGTTTGGGTGAGTGGATAGGCTATTCAGGGCTCCCGACTAATAGTCGGGTGTTAGGGACTTTGGGGGAAGACAGGAGGAAGCAGGAGGGGGAGTTGCAGCTGAAGAG_-_ATGAGTCACAGGAAGTTCGAGCATCCCAGGCATGGCTCTCTGGGATTTCTCCCTCGCAAGAGGGCACGTAGACATAGGGGCAAAGTGAAGTCATTCCCTAGGGATGATCCATCGAAGCCCTGCAAGCTGACGGCCTTTTTGGGCTACAAGGCCGGCATGACCCACATCGTCAGAGAGGTCGAGAAGCCCGGATCCAAGCTTCACAAGAAGGAAACATGCGAGGCTGTGACGTTAATCGAGACCCCGCCAATGGTGATCGTGGGCGTTGTCGCTTATATCAAGACACCCAGAGGGCTTCGGACCCTTAACACAGTGTGGGCTCAGCACCTCAGCGAGGAGGTGCGGAGGCGGTTTTACAAAAACTGGTACAGGGCCAAGAAGAAGGCTTTCACTAAATACGCCAAGAAGTATGATTCCGAGGATGGTAAGAAGGAGATCCAGGCGGAGCTCGAGAAAATGAAGAAGTATGCAACCGTCATTAGGGTTCTTGCTCACACCCAGATTAAGAAGATGAAAGGATTGAAACAGAAGAAGGCACACCTGATGGAAATACAAGTTAATGGGGGAACAATTGCGCAGAAAGTAGATTATGCGTATAACTTCTTTGAGAAACAAGTTCCTATTGATGCTCTTTTCCAAAAAGATGAAATGATTGATGTTATTGGTGTCACAAAGGGTAAGGGCTATGAAGGTGTGGTAACCAGGTGGGGTGTTACAAGACTGCCCCGAAAAACTCACAGGGGTTTGCGTAAGGTAGCTTGTATTGGTGCTTGGCATCCAGCTAGGGTTTCCTTTACTGTTGCCAGGGCTGGTCAGAATGGTTACCATCATCGTACTGAGATGAATAAGAAGATCTACAAGATTGGCAAGTCCGATCAGGAATCCCACAAGGCAATGACTGAATTCGATAGGACTGAGAAGGATATAACACCAATGGGTGGTTTCCCTCATTATGGTGTGGTAAAAGATGATTACATTATGATCAGAGGATGTTGTATGGGCACTAAGAAGCGGGTGGTTACTTTGCGGCAGTCATTGCTGAAACAGACTTCTCGTACTGCTTTGGAGGAAATCAAGTTGAAGTTCATTGACACATCCTCTAAGTTTGGACATGGGCGATTCCAGACAACCCAGGAAAAGGCCAAGATTTTTGGTAAATTGAAGGCTTAG___GTAATTAATACTAGTTGTGGATGTTTCATTCATGCCTGCATATAGACTTTTTGCAGGTGAGGTTAACTTCAAGGATTAATTTTGAATGTTGATTTGCAATCCTTTGTTATGTATTGGATTTTTCAGATAATTTTATTGAGCACTGATTTTTGCGAGGCAACTTTCAGTATTCATTATTGGGAGCACATAATTTTAGCTGTTTTTTAAGTGTTAAGAGTAGCTGCATAAAAACAGCCATTTATTTAATTGCTAGGTTAAAAGAGACAATGTTGTCTGCCTTCTTGAAAATGGATTACTGTGTTCTGTGCTCATTATGATGTCTTCTTTTGTTGTGTTGGAAGGCAAATATCCATTTTCATGACTTTCTGCTCTCAAGATTGGCTGACTGATGGTGAAGTGGTTGCTATGAATATGAAGATTTATGTGT

Fln Alignment:

Contig17236___MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPRDDPSKPCKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTLIETPPMVIVGVVAYIKTPRGLRTLNTVWAQHLSEEVRRRFYKNWXXXXXXXXXXXXXXXDSEDGKKEIQAELEKMKKYATVIRVLAHTQIXXXXXXXXXXAHLMEIQVNGGTIAQKVDYAYNFFEKQVPIDALFQKDEMIDVIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKIGKSDQESHKAMTEFDRTEKDITPMGGFPHYGVVKDDYIMIRGCCMGTKKRVVTLRQSLLKQTSRTALEEIKLKFIDTSSKFGHGRFQTTQEKAKIFGKLKA
A9NZI7_______________MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPRDDQSKPCKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTLIETPPMVIVGVVAYIKTPRGLRTLNTVWAQHLSEEVRRRFYKNWYRAKKKAFTKYAKKYDSEEGKKDIQTELEKMKKYATVIRVLAHTQIKKMKGLKQKKAHLMEIQVNGGTVAQKVDYAYNFFEKQVPIDALFQKDEMVDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKIGKADQESHKAMTEFDRTEKDITPMGGFPHYGVLKDDYIMIRGCCVGTKKRVVTLRQSLLKQTSRTALEEIKLKFIDTSSKFGHGRFQTTQEKAKIFGKLKA

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1349		2		97	0.977151
1350	2			97	0.977151
1353	1			92	1.0
1440	2			97	0.930363
1443	97			2	0.941605
1493		2		97	0.964186
1503		2		97	0.972772
1533			3	96	0.988939
1546		3	1	94	0.951749
1635	91		8		0.999766
1642	10			89	0.999919
1643		10	89		0.999919
1644	10			89	0.999919
1645		89		10	0.999919
1656	85			14	0.993533
1740	25		75		0.996473
1799		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain