SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17150

Length: 1327 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17150

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, putative n=1 Tax=Ricinus communis RepID=B9RUI5_RICCO	-	-	0.0	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	7.507e-08	-

Source	Gene names
Sma3	AT1G27190; AT1G69990; AT3G28450; AT5G48380; At1g27190; At3g28450; At3g28450/MFJ20_13; At5g48380; At5g48380/MJE7.1; GSVIVT00011796001; GSVIVT00012145001; GSVIVT00020838001; GSVIVT00033978001; GSVIVT00034743001; LOC_Os11g14420; LRR-RLK; MpRLK4; MtrDRAFT_AC1

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G28450.1	Leucine-rich repeat protein kinase family protein chr3:10667359-10669176 FORWARD LENGTH=605	49%
RefSeq	Arabidopsis thaliana	NP_189486.1	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002298520.1	predicted protein [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM41

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 280 aas, your sequence is shorter than subject: 227 - 613

Fln protein: MRKFGYLGLVGFIVLFQLIHRISSQPAVKEDDIRCLNITHNQLKDPQDNLYSWKFDSSGHGFTCNFLGITCWHNDDDKVLSLSLQGLGLQGGFPSGLKYCGSMTSLVLSQNSLTGNIPKELCHWLPYLVTIDLSHNQFTGPIPSHLYNCRYLNVLRLNGNQLTGKIPWQLAQLQRLKEFNVANNRLSGPIPAYFSNWTASGFQNNPGLCGPPLTKTCSKILPSISL*

Protein Length: 228

Fln nts: ATGGGATGCAAAGTCGTTTAAATATTTCACTTCCAAATTCTATCCCCTTGGGGGCGGCGTCAAGAGCCGATGCCGCGTTGACTACGATGAACAATGCAGAGCAGATTTCCATGCTAAATCAATGCCTCGCTCTGAAAATAAACAAACAACCGCGACGAAGGAAAGTTAGAAAAGGGGAGCAGCAGCCATGGATTCGCCATCGGAAGCTTTCTTGAAAAGGTCAAGGCAATTTGATTTGATCAGTGGGTAATCCATGCGTGTTGGTATAGAAGAAATACAGATTGAATTGGGTAAGGAATCTTGTTATTAAGACAGTCAAGCATTGAAGCC_-_ATGAGAAAATTTGGGTATTTGGGCCTGGTAGGGTTTATAGTGCTTTTCCAATTGATACACCGAATTTCTTCTCAGCCTGCTGTGAAAGAGGATGATATTCGGTGCCTTAATATTACTCACAATCAATTGAAGGACCCTCAAGATAATCTCTACAGCTGGAAATTTGACAGCAGCGGCCACGGTTTTACTTGCAATTTCCTGGGAATTACTTGCTGGCACAACGATGATGACAAAGTGCTGTCACTTTCGCTTCAAGGGTTAGGGCTTCAGGGTGGGTTTCCATCTGGATTAAAGTATTGTGGGAGTATGACGAGCTTGGTTCTCTCTCAGAATAGTCTTACAGGGAACATTCCCAAGGAACTTTGCCATTGGCTTCCTTATCTGGTAACCATTGATCTTTCCCACAACCAGTTTACAGGACCTATTCCTTCCCATCTTTATAATTGCAGGTATCTCAATGTTCTTCGTCTGAATGGCAATCAACTTACAGGCAAAATTCCCTGGCAATTGGCACAGCTCCAGCGTCTCAAGGAATTTAATGTAGCAAACAACAGACTTTCTGGACCTATACCTGCTTATTTCTCCAACTGGACAGCATCTGGTTTTCAGAATAACCCTGGGCTATGTGGGCCTCCCCTTACAAAGACATGCAGCAAGATATTGCCTTCCATCTCTTTATGAACTTTTTGGTGTATGTCTTAATATTATATAGATAACAGGCATTATTGATATCAAGATATGCCTTGGTTTGGTTTATCAGCATTTTATTAGGAAATATTACATAGACATTATGGTTCTTGAGCATGGATAGCACTTAATTACTGAATAGACATTATATTTCTTGAGCATATGTGATGTACATAAGTGAATTGGCTTATTGGGAATGGTTACCAATATTGTTGGTTGGCCAATTACCCAATGGAGAATGTTACTGATTTTAGTTGTGCAGTAGTCGTGGCTGTGCTAGTCATCAAGGATTTATATTTTGGATTTTACA

Fln Alignment:

Contig17150___MRKFGYLGLVGFIVLF-QLIHRISSQPAVKEDDIRCLNITHNQLKDPQDNLYSWKFDSSGHGFTCNFLGITCWHNDDDKVXXXXXXXXXXXXXXXXXXKYCGSMTSLVLSQNSLTGNIPKELCHWLPYLVTIDLSHNQFTGPIPSHLYNCRYLNVLRLNGNQLTGKIPWQLAQLQRLKEFNVANNRLSGPIPAYFSNWTASGFQNNPGLCGPPLTKTC
B8LM41_______________MRKFGCLSLLGVMLLILQLTCPVSSQPSVAENDIQCLQSTKNHLKDPQDNLYTWNFDNSTKGFICNFLGITCWHNDDNKVLSISLQEMGLQGEFPPGVKYCGSMTSLTLSQNSLTGTIPKELCQWLPYLVTIDLSQNEFTGSIPAELHNCTYLNILRLNGNQLTGEIPWQLSRLDRLTELNVANNKLTGYIPSLEHNMSASYFQNNPGLCGKPLSNTC

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
962		90		10	0.90298
1159		4	95		0.996599
1190		6	93		0.999998
1276	9		90		0.999872
1281	75	25			0.996473
1282			25	75	0.996473
1285			25	75	0.996473
1287			75	25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain