SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17080

Length: 1971 nt

UniGene Fasta

>sp_v3.0_unigene17080
ATGACAAGCATCTCCGTAAAGCGACCCAATACCCACAGGCCCCCACGGTTTACTTACGAAATCATCATTATTATTAGGCAGACTCAAGTTATTGGGCAGACTCAAGGGTTTGGTGAAAACGTGAAGGTTAGCTATACGCAGACGCAGACAGACAGAGGAAGAAGAACAGAGCCTAGGGTTTGGTGGGAGTAACCAACAAGGTTGTGGTTGGTGAGGAAGACGACTCTTTGTCTGACCCGACTTCCTTTTTCTGTGAGTTCTGTGGTTCCTGCGTCGGACGCAAATCGGCCATTGACAGTGTTATTCAATCTTCTCAGTTAAACTCTAAGAAGAGAAGATGTGGGGTGCTTTGCGGCAAAAATCTGGCATGACAACTCTTTTTTCTTCATTGAGACATGGTCAAGTTTTGGAGAGGTTGGTGCCTATGGCATCCACACCCTTAAGAAATTTATCTACTGCTGCTAAAGAGATATCTGTGAGGGATGCTCTTAACTCAGCTATTGATGAAGAAATGTCTGCAGATCCAAAAGTCTTTTTAATGGGAGAGGAGGTTGGTGAATACCAAGGAGCATATAAGATATCAAAAGGCCTTTTGCAGAAGTTTGGACCTGACAGGGTTCTAGACACCCCAATCACTGAGGCGGGTTTTACTGGAATTGCTGTGGGCGCAGCATACTATGGGCTACGACCAATTGTGGAGTTCATGACCTTTAATTTTGCCATGCAGGCTATTGATCAAATAATAAATTCTGCAGCCAAGACATATTATATGTCTGCAGGTCAAATTTCTGTTCCCATTGTTTTTAGAGGACCAAATGGAGCTGCTGCTGGTGTTGGTGCTCAGCACTCACAGTGTTATGCTGCATGGTATGCTTCTTGTCCAGGGCTGAAAGTTTTGACCCCCTATTCAGCAGAAGATTCTCGTGGATTGATGAAAGCTGCCATCCGTGATCCAGATCCTGTCGTTTTTCTTGAAAATGAATTGCTGTACGGGGAGTCTTTTCCAGTCTCAGCAGAGTGTCTTGATCCTAGCTTCTGTCTCCCCATTGGGAAGGCAAAGATTGAACGAGAAGGAAAAGATGTAACGATCACTGCCTTTTCTAAAATGGTTGGCTATGCATTACAGGCTGCACAGGAGCTTGAAAAGGAAGGGATCAGTGCTGAGGTAATAAATCTTCGTTCGATTCGACCATTGGACAGAGCTACAATTAATGCATCCGTTAGGAAGACAAGTCGACTTGTGACAGTGGAAGAAGGCTTTCCACAACATGGAATTGGTGCAGAGATCTGCGCTTCTGTGGTTGAGGAAAGTTTTGAATATTTGGATGCTCCTGTGGAAAGAATCACCGGTGCAGATGTTCCTATGCCATATGCTGCAAATTTGGAGCGCTTAGCTGTTCCACAGGTCGAAGATATCATCCGTGCCTCAAAAAGAGCTTGTTATAGAGCAGTTCCAATGAGTGCAGTCGCGTAGTGTAAATGTTGATTTCTTTGATCATCGTCATGCAAGTTTGTATACTGTGAACAAAGTCTCTATATATGGAAATCTGCCTAAGGCACATGGCAAGCTCATTTTTAACTTTTGTTTATGTTAAGATTGTTGGCACTGTCTATTTTAGTGCCCGCGAAGGTCACATGGAGAGAGGGCTTGTTTTTTCTGGAGTTGGAAAAAAGTATGTTCATTCTACATGTTTTCCATGAGTCCAGTGATTAGAATCGATCCTTGTTTGGTTCAGCTTCAATATTATGCACTATTATTGTATGCCTGGTTCTTGAGAAATTGGTGCCAGCTCATTCTTCTGAGTTCAAAAAATAATGATCGAATACCAGTGGTTGTTCGTAATGTTAGCCGTTCAGAAAAAATGGCATTTCATTTGGATATATAGCACATTTTAAAGCAATTTCTGAACATGCATTCAGATATAATCTAGATAAGTACATCAATGTTTTGGGCACTTTTCTGGATATAAT

Ace file of the UniGene sp_v3.0_unigene17080

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pyruvate dehydrogenase E1 beta subunit isoform 2 [Zea mays] gb\|AAC72193.1\| pyruvate dehydrogenase E1 beta subunit isoform 2 [Zea mays]	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Transketolase, C-terminal	IPR005476	-	-
Sma3	Transketolase-like, C-terminal	IPR015941	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G50850.1	MAB1 Transketolase family protein chr5:20689671-20692976 FORWARD LENGTH=363	80%
RefSeq	Arabidopsis thaliana	NP_199898.1	pyruvate dehydrogenase E1 component subunit beta [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002304661.1	predicted protein, partial [Populus trichocarpa]	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPU2

Fln msg:

Fln protein: MWGALRQKSGMTTLFSSLRHGQVLERLVPMASTPLRNLSTAAKEISVRDALNSAIDEEMSADPKVFLMGEEVGEYQGAYKISKGLLQKFGPDRVLDTPITEAGFTGIAVGAAYYGLRPIVEFMTFNFAMQAIDQIINSAAKTYYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASCPGLKVLTPYSAEDSRGLMKAAIRDPDPVVFLENELLYGESFPVSAECLDPSFCLPIGKAKIEREGKDVTITAFSKMVGYALQAAQELEKEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGFPQHGIGAEICASVVEESFEYLDAPVERITGADVPMPYAANLERLAVPQVEDIIRASKRACYRAVPMSAVA*

Protein Length: 380

Fln nts: ATGACAAGCATCTCCGTAAAGCGACCCAATACCCACAGGCCCCCACGGTTTACTTACGAAATCATCATTATTATTAGGCAGACTCAAGTTATTGGGCAGACTCAAGGGTTTGGTGAAAACGTGAAGGTTAGCTATACGCAGACGCAGACAGACAGAGGAAGAAGAACAGAGCCTAGGGTTTGGTGGGAGTAACCAACAAGGTTGTGGTTGGTGAGGAAGACGACTCTTTGTCTGACCCGACTTCCTTTTTCTGTGAGTTCTGTGGTTCCTGCGTCGGACGCAAATCGGCCATTGACAGTGTTATTCAATCTTCTCAGTTAAACTCTAAGAAGAGAAG_-_ATGTGGGGTGCTTTGCGGCAAAAATCTGGCATGACAACTCTTTTTTCTTCATTGAGACATGGTCAAGTTTTGGAGAGGTTGGTGCCTATGGCATCCACACCCTTAAGAAATTTATCTACTGCTGCTAAAGAGATATCTGTGAGGGATGCTCTTAACTCAGCTATTGATGAAGAAATGTCTGCAGATCCAAAAGTCTTTTTAATGGGAGAGGAGGTTGGTGAATACCAAGGAGCATATAAGATATCAAAAGGCCTTTTGCAGAAGTTTGGACCTGACAGGGTTCTAGACACCCCAATCACTGAGGCGGGTTTTACTGGAATTGCTGTGGGCGCAGCATACTATGGGCTACGACCAATTGTGGAGTTCATGACCTTTAATTTTGCCATGCAGGCTATTGATCAAATAATAAATTCTGCAGCCAAGACATATTATATGTCTGCAGGTCAAATTTCTGTTCCCATTGTTTTTAGAGGACCAAATGGAGCTGCTGCTGGTGTTGGTGCTCAGCACTCACAGTGTTATGCTGCATGGTATGCTTCTTGTCCAGGGCTGAAAGTTTTGACCCCCTATTCAGCAGAAGATTCTCGTGGATTGATGAAAGCTGCCATCCGTGATCCAGATCCTGTCGTTTTTCTTGAAAATGAATTGCTGTACGGGGAGTCTTTTCCAGTCTCAGCAGAGTGTCTTGATCCTAGCTTCTGTCTCCCCATTGGGAAGGCAAAGATTGAACGAGAAGGAAAAGATGTAACGATCACTGCCTTTTCTAAAATGGTTGGCTATGCATTACAGGCTGCACAGGAGCTTGAAAAGGAAGGGATCAGTGCTGAGGTAATAAATCTTCGTTCGATTCGACCATTGGACAGAGCTACAATTAATGCATCCGTTAGGAAGACAAGTCGACTTGTGACAGTGGAAGAAGGCTTTCCACAACATGGAATTGGTGCAGAGATCTGCGCTTCTGTGGTTGAGGAAAGTTTTGAATATTTGGATGCTCCTGTGGAAAGAATCACCGGTGCAGATGTTCCTATGCCATATGCTGCAAATTTGGAGCGCTTAGCTGTTCCACAGGTCGAAGATATCATCCGTGCCTCAAAAAGAGCTTGTTATAGAGCAGTTCCAATGAGTGCAGTCGCGTAG___TGTAAATGTTGATTTCTTTGATCATCGTCATGCAAGTTTGTATACTGTGAACAAAGTCTCTATATATGGAAATCTGCCTAAGGCACATGGCAAGCTCATTTTTAACTTTTGTTTATGTTAAGATTGTTGGCACTGTCTATTTTAGTGCCCGCGAAGGTCACATGGAGAGAGGGCTTGTTTTTTCTGGAGTTGGAAAAAAGTATGTTCATTCTACATGTTTTCCATGAGTCCAGTGATTAGAATCGATCCTTGTTTGGTTCAGCTTCAATATTATGCACTATTATTGTATGCCTGGTTCTTGAGAAATTGGTGCCAGCTCATTCTTCTGAGTTCAAAAAATAATGATCGAATACCAGTGGTTGTTCGTAATGTTAGCCGTTCAGAAAAAATGGCATTTCATTTGGATATATAGCACATTTTAAAGCAATTTCTGAACATGCATTCAGATATAATCTAGATAAGTACATCAATGTTTTGGGCACTTTTCTGGATATAAT

Fln Alignment:

Contig17080___MWGALRQKSGMTTLFSSLRHGQVLERLVPMASTPLRNLSTAAKEISVRDALNSAIDEEMSADPKVFLMGEEVGEYQGAYKISKGLLQKFGPDRVLDTPITEAGFTGIAVGAAYYGLRPIVEFMTFNFAMQAIDQIINSAAKTYYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASCPGLKVLTPYSAEDSRGLMKAAIRDPDPVVFLENELLYGESFPVSAECLDPSFCLPIGKAKIEREGKDVTITAFSKMVGYALQAAQELEKEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGFPQHGIGAEICASVVEESFEYLDAPVERITGADVPMPYAANLERLAVPQVEDIIRASKRACYRAVPMSAVA
B8LPU2_______________MWGALRQKSGLTTLVSSLKHGQVLERFAPMASTPLRQLSTAAKEMTVRDALNSAIDEEMSADPKVFLMGEEVGEYQGAYKISKGLLQKFGPDRVLDTPITEAGFTGIGVGAAFYGLRPIVEFMTFNFAMQAIDQIINSAAKTYYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYGSCPGLKVLTPYSAEDSRGLMKAAIRDPDPVIFLENELLYGESFPVSAECLDPSFCLPIGKAKIEREGKDVTITAFSKMVGYALQAAQELEKEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGFPQHGIGAEICTSVVEESFEYLDAPVERITGADIPMPYAANLERLAVPQVEDIIRASKRACYRAVPMSAVA

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1555			44	55	1.0
1583		1		84	1.0
1603	3			96	0.99245
1803		8		91	1.0
1858	90		10		0.90298
1868	10		90		0.90298
1900	16		83		0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain