SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17043

Length: 1161 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17043

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thaumatin-like protein L1 n=1 Tax=Pinus monticola RepID=D3IZ05_PINMO	-	-	0.0	95%
FL-Next	tr=Thaumatin-like protein L1; Pinus monticola (Western white pine) (Strobus monticola).	-	-	0.0	95%
Sma3	Thaumatin-like protein	-	-	1.323e-14	-

Source	Gene names
Sma3	At1g18250; At1g19320; At1g75030; At1g75040; At1g75050; At2g28790; BFTP; CBP1; Cry j 3.5; F9E10.10; F9E10.11; F9E10.12; GSVIVT00000591001; GSVIVT00014680001; GSVIVT00024359001; GSVIVT00026571001; GSVIVT00036771001; GSVIVT00037139001; LOC_Os10g27280; OJ1212

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3	regulation of anthocyanin biosynthetic process	GO:0031540	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	GNS1/SUR4 membrane protein	IPR002076	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G28790.1	Pathogenesis-related thaumatin superfamily protein chr2:12354664-12355413 REVERSE LENGTH=249	50%
RefSeq	Arabidopsis thaliana	NP_180445.1	pathogenesis-related thaumatin-like protein [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002298366.1	predicted protein [Populus trichocarpa]	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D3IZ05

Fln msg:

Fln protein: MGLILRSSALSLLLILFSGGAMMVICAKTSPLTITIMNSCPVTIWPGLQASEGHDVLEQGGFALESLKSRSFTVANPWNGVVWARTGCSFSGGNGSCLTGDCDGKLQCNGTGGRNPVTLAQLSLHHGGNDVSSYTLSLVNGFNLPLTITPHGGRGQCGIPRCRANMLESCPKELQVKNGNNVIACKTACQAFRTDAYCCTGQHYNGSRTCPPTTYSQMFKRACPNAFAYPDDNPALVHNCVTPNEIKLIFCH*

Protein Length: 254

Fln nts: TATGGGGATCCATCTAGTATCTGCCTCCGGGCTTCCCTTGCATTTCTTTCTTCTTCAATATCATTTAAGACTTAACAGTCTTAATCCTGATATCTGAGTAGTGATCAAT_-_ATGGGCTTAATCTTGAGGTCGAGCGCCCTTTCTCTATTACTGATTCTTTTCTCAGGTGGGGCAATGATGGTGATCTGCGCTAAAACCAGTCCTCTGACCATTACTATCATGAACAGTTGCCCTGTCACTATATGGCCTGGATTGCAGGCAAGTGAAGGGCACGATGTGCTGGAGCAAGGCGGGTTTGCTCTGGAAAGTCTTAAATCCAGGAGTTTTACCGTGGCAAACCCGTGGAACGGTGTTGTTTGGGCAAGAACTGGTTGCAGTTTCAGCGGAGGGAACGGATCATGCCTAACGGGAGACTGTGATGGTAAACTACAGTGCAATGGCACGGGAGGAAGAAACCCGGTGACTCTTGCGCAGCTGTCTTTGCATCATGGAGGCAATGATGTTTCTTCATATACTCTGAGTCTGGTAAACGGTTTCAACTTGCCCTTAACCATTACACCTCATGGAGGTCGCGGGCAATGCGGCATCCCTAGATGTAGGGCTAATATGCTTGAGAGCTGTCCTAAGGAGCTTCAAGTAAAGAATGGAAATAATGTAATAGCTTGCAAGACTGCATGCCAGGCTTTCAGAACAGATGCCTACTGCTGCACTGGCCAGCATTACAACGGCTCCCGTACATGCCCGCCTACAACATATTCCCAGATGTTTAAACGCGCATGCCCTAATGCTTTCGCGTATCCCGACGACAATCCTGCTCTCGTTCACAACTGCGTTACACCAAACGAGATCAAGCTCATCTTCTGTCACTAG___ATCATCACAGCAACACCACTGCTTCCAACGCTATGCCATCCATGCTGATCGGCTCTTAATTTAATACCTATAGTTGTTATAATATCGTCATGATACAGTGCATACTTCTATTTTCAGATTGGAACAAGTAAATAAAATGACTAGCCTGTCAGAGCTTTTATGCGTTTCTTATACTGTACAATTTGAAGTTGGAAAATAAATGTTTAACCTCGATCGAAGATATGTGATGCAATTCTCACTGGAAGAGTGGTGGATCTAAATGTTTGCCGAGATAGAAGGAGCTTTGAATTGAT

Fln Alignment:

Contig17043___GGAMMVICAKTSPLTITIMNSCPVTIWPGLQASEGHDVLEQGGFALESLKSRSFTVANPWNGVVWARTGCSFSGGNGSCLTGDCDGKLQCNGTGGRNPVTLAQLSLHHGGNDVSSYTLSLVNGFNLPLTITPHGGRGQCGIPRCRANMLESCPKELQVKNGNNVIACKTACQAFRTDAYCCTGQHYNGSRTCPPTTYSQMFKRACPNAFAYPDDNPALVHNCVTPNEIKLIFCH
D3IZ05_______________GGAIMVICAKTSPLTITIMNSCPTTIWPGLQASEGHDVLEQGGFALESLKSRSFSVANPWNGVVWARTGCSFSGEKGSCLTGDCDGKLQCNGTGGRNPVTLAQLSLHHGGNDVSSYTLSLVNGFNLPLTFTPHGGRGRCGIPRCMANMLESCPKELQVKNGDNVIACKTACQAFRTDAYCCTSQHYNGSRTCPPTTYSQIFKRACPNAFAYPDDNPALVHNCVTPNEIKLIFCH

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
627	95		4		0.994598
654		3		96	0.983282
796			0	97	1.0
838	2			97	1.0
857		0		98	1.0
885		99		0	0.973661
979		0		97	0.999995
1002	96		0		1.0
1020		2	97		0.997997
1034	3	1		94	0.947029
1036	4	93			0.973796
1037	4	6		88	0.999992
1038	4			95	0.99692
1043	5			94	0.998578

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain