SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17037

Length: 2373 nt

UniGene Fasta

>sp_v3.0_unigene17037
CGTCGTGACCTTGGCTGTCATGGGAGGATTCTAGTGGAAAGCTTTTCAGAAGTACGAGGGTTAAGTCATTTTGAGGGAAATTTGTGGGCTTCCTGTATAGGTTTCAGAGCATCTGTTGCATGTGGGGCACAGGCTGTGCGCCATTGTTGTGTTTCAAGCTAGGGTCATCGCTGTGATTATAATGATATAAGAAGGGCTGGGGTCTTGAACAAATGCAAGTGCGGATTAGTAGTGTATTGGGTTGTGCAAAGGAAGTGGTGAAGGGTCCATCTAGTTATATATTGGATTGGAGGTGGTGAAGGGCATATATATATAGTTGTGTGTTTTGTTGTAGGCAGTAGGACTGTGGATTACTAGGATTATAGCTCAACTGATTGAAAGACTGTGTTTTACAAAGGTGGACTAATGGGGGAAAAACTTGGGAGTAGAGGTCTGCTCATCCTGCTGGCTTTTGTGTTATGCATCTCTTTTACAGCTGAAGCCATAGGTGTGAACTATGGAAGAATGGGAGACGATCTTCCTCCTCCCAGTGAAGTGGCGAAATTCCTACAGACCACAATGATTGACAAAGTGAAGCTCTTCGATGCAGATCCTGGTGTCTTGAAAGCTTTTGCCAATACAAATATAGGGGTTGTTGTCGCCGTTGCAAATGACCAAATCGCAGCCCTTAACAAACTGCCTGCAGCACAGGATTGGGTGAAGGAAAACGTGGCTCCTTTCGTACCAGCTACAAATATACTTGCCATATCTGTGGGAAATGAGATTCTTTCCACGGGAAACAAAGTGCTAATATCCCAACTCGTCCCTGCCATGCAAAATCTTCATACTGCTCTTGTTGGTGCCTCTCTTGACAAGCAAATCAAGGTCTCTACACCTCATTCGCTTGGTATTCTGTCTGCTTCTGAGCCCCCATCCATAGGAAGGTTCCGTCGAGGCTATGATAGAGTTATTCTAAAGCCATTGTTGAACTTTCTCAGAACAACAGGGGCTCCTTTCATGATCAACCCTTATCCATATTTTGGCTACACAGATAAGACCTTGAACTATGCTCTGTTTAAGCCAAATCAAGGTGTTTTTGACAATAATACTGGAATCACCTATACCAACATGTTCCAAGCTCAGTTGGATGCTGTCTACTCGGCTATGAAACTTTTGGGGTTCTCAGATGTAGATATCGTTGTGGCTGAAACCGGGTGGCCATCAGTTGGAGATCCTGACCAGACAGCTGTCAATGTGGAGAACGCTCTTTCCTACAATGGCAACCTCATCAAACTTGTCAATTCCAATGCAGGAACTCCGTTGATGCCCAACAAAACCTTTGATACTTACATATTTTCTCTCTTCAATGAAGATCTCAAGCCCGGTCCTACTGCAGAGCGCAACTTTGGGCTATTCAAACCAGACATGACCATGGTTTATGATGTTGGGCTCATGAAGTCTGAGAGTGCAACTCCTGCGCCTATTTCTACGGCACCAGTAACACCGGCCACCCCAGCACCTATTTCTACAGCACCAGTAACACCGACCACCCCTGCACCTATTTCTACAGCACCAGTAACACCGACCACCCCGGCACCAGTTACAGGAACAGATAAGTCTTGGTGTGTTGCTAAACCAGATGCAGATCCCAATGTACTCCAAGACAATATAGATTATGCATGTGGGCAGGGAGTGGACTGCAGTGCTATTCAAGCAGGTGGCCAGTGCTTTACTCCAAATACTGTTGTGGCACATGCTACGTATGCAATGAATTCTTATTACCAGCTAACTGGTCGCCACAGCTATGATTGTGATTTTGCTCAAACAGGGGTTCTTACACAGGAGGATCCAAGTTATGGTACGTGTGTATACCCGACAATATAGCGTACAATTCACCTTCAGAAATTTTTTCAAAGCTCATTGAAGAAGCGTATTAGCATCATCGGCTAATATTTAGGATAGCATTTATTTAATTTAACTGTGTTATATAGTACTTGTAATCAGTAACAGCTATAAAGCTGCAGAATTCAGGTTATAGTGGACCATCAGTAGGGATTCTGTCAGTGGTGCTAATTTATTTGTATACGATTTGCCTTTACGTTTTGTAGCGATGTGGGTGTTATCGATGAATATTAAATATATTCATGTAACGCTTGCGAATTATAATTTTACCTGTTTTATAATATTTTCCAACGCTGGCGTTCTTTGAATGGTATCTATCTGAAGGATGTGTTCTGCAACACCTTACTGCGAATTATAATTTTACCAGTTTTATAAGAGATTCCAACACTGGCGCAAATTTATTGGTATACATCTAAAGGTGTGTGCAACGTGTAACCGCGTACTTTTAATGGTATCTGTCTGAAGGTGTGTGCAAAACATGTAAGCGCGTTT

Ace file of the UniGene sp_v3.0_unigene17037

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana] gb\|AED93290.1\| O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	X8	IPR012946	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G24318.1	O-Glycosyl hydrolases family 17 protein chr5:8282285-8283956 REVERSE LENGTH=458	51%
RefSeq	Arabidopsis thaliana	NP_001031936.1	O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002318439.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVN4

Fln msg:

Fln protein: MGEKLGSRGLLILLAFVLCISFTAEAIGVNYGRMGDDLPPPSEVAKFLQTTMIDKVKLFDADPGVLKAFANTNIGVVVAVANDQIAALNKLPAAQDWVKENVAPFVPATNILAISVGNEILSTGNKVLISQLVPAMQNLHTALVGASLDKQIKVSTPHSLGILSASEPPSIGRFRRGYDRVILKPLLNFLRTTGAPFMINPYPYFGYTDKTLNYALFKPNQGVFDNNTGITYTNMFQAQLDAVYSAMKLLGFSDVDIVVAETGWPSVGDPDQTAVNVENALSYNGNLIKLVNSNAGTPLMPNKTFDTYIFSLFNEDLKPGPTAERNFGLFKPDMTMVYDVGLMKSESATPAPISTAPVTPATPAPISTAPVTPTTPAPISTAPVTPTTPAPVTGTDKSWCVAKPDADPNVLQDNIDYACGQGVDCSAIQAGGQCFTPNTVVAHATYAMNSYYQLTGRHSYDCDFAQTGVLTQEDPSYGTCVYPTI*

Protein Length: 487

Fln nts: CGTCGTGACCTTGGCTGTCATGGGAGGATTCTAGTGGAAAGCTTTTCAGAAGTACGAGGGTTAAGTCATTTTGAGGGAAATTTGTGGGCTTCCTGTATAGGTTTCAGAGCATCTGTTGCATGTGGGGCACAGGCTGTGCGCCATTGTTGTGTTTCAAGCTAGGGTCATCGCTGTGATTATAATGATATAAGAAGGGCTGGGGTCTTGAACAAATGCAAGTGCGGATTAGTAGTGTATTGGGTTGTGCAAAGGAAGTGGTGAAGGGTCCATCTAGTTATATATTGGATTGGAGGTGGTGAAGGGCATATATATATAGTTGTGTGTTTTGTTGTAGGCAGTAGGACTGTGGATTACTAGGATTATAGCTCAACTGATTGAAAGACTGTGTTTTACAAAGGTGGACTA_-_ATGGGGGAAAAACTTGGGAGTAGAGGTCTGCTCATCCTGCTGGCTTTTGTGTTATGCATCTCTTTTACAGCTGAAGCCATAGGTGTGAACTATGGAAGAATGGGAGACGATCTTCCTCCTCCCAGTGAAGTGGCGAAATTCCTACAGACCACAATGATTGACAAAGTGAAGCTCTTCGATGCAGATCCTGGTGTCTTGAAAGCTTTTGCCAATACAAATATAGGGGTTGTTGTCGCCGTTGCAAATGACCAAATCGCAGCCCTTAACAAACTGCCTGCAGCACAGGATTGGGTGAAGGAAAACGTGGCTCCTTTCGTACCAGCTACAAATATACTTGCCATATCTGTGGGAAATGAGATTCTTTCCACGGGAAACAAAGTGCTAATATCCCAACTCGTCCCTGCCATGCAAAATCTTCATACTGCTCTTGTTGGTGCCTCTCTTGACAAGCAAATCAAGGTCTCTACACCTCATTCGCTTGGTATTCTGTCTGCTTCTGAGCCCCCATCCATAGGAAGGTTCCGTCGAGGCTATGATAGAGTTATTCTAAAGCCATTGTTGAACTTTCTCAGAACAACAGGGGCTCCTTTCATGATCAACCCTTATCCATATTTTGGCTACACAGATAAGACCTTGAACTATGCTCTGTTTAAGCCAAATCAAGGTGTTTTTGACAATAATACTGGAATCACCTATACCAACATGTTCCAAGCTCAGTTGGATGCTGTCTACTCGGCTATGAAACTTTTGGGGTTCTCAGATGTAGATATCGTTGTGGCTGAAACCGGGTGGCCATCAGTTGGAGATCCTGACCAGACAGCTGTCAATGTGGAGAACGCTCTTTCCTACAATGGCAACCTCATCAAACTTGTCAATTCCAATGCAGGAACTCCGTTGATGCCCAACAAAACCTTTGATACTTACATATTTTCTCTCTTCAATGAAGATCTCAAGCCCGGTCCTACTGCAGAGCGCAACTTTGGGCTATTCAAACCAGACATGACCATGGTTTATGATGTTGGGCTCATGAAGTCTGAGAGTGCAACTCCTGCGCCTATTTCTACGGCACCAGTAACACCGGCCACCCCAGCACCTATTTCTACAGCACCAGTAACACCGACCACCCCTGCACCTATTTCTACAGCACCAGTAACACCGACCACCCCGGCACCAGTTACAGGAACAGATAAGTCTTGGTGTGTTGCTAAACCAGATGCAGATCCCAATGTACTCCAAGACAATATAGATTATGCATGTGGGCAGGGAGTGGACTGCAGTGCTATTCAAGCAGGTGGCCAGTGCTTTACTCCAAATACTGTTGTGGCACATGCTACGTATGCAATGAATTCTTATTACCAGCTAACTGGTCGCCACAGCTATGATTGTGATTTTGCTCAAACAGGGGTTCTTACACAGGAGGATCCAAGTTATGGTACGTGTGTATACCCGACAATATAG___CGTACAATTCACCTTCAGAAATTTTTTCAAAGCTCATTGAAGAAGCGTATTAGCATCATCGGCTAATATTTAGGATAGCATTTATTTAATTTAACTGTGTTATATAGTACTTGTAATCAGTAACAGCTATAAAGCTGCAGAATTCAGGTTATAGTGGACCATCAGTAGGGATTCTGTCAGTGGTGCTAATTTATTTGTATACGATTTGCCTTTACGTTTTGTAGCGATGTGGGTGTTATCGATGAATATTAAATATATTCATGTAACGCTTGCGAATTATAATTTTACCTGTTTTATAATATTTTCCAACGCTGGCGTTCTTTGAATGGTATCTATCTGAAGGATGTGTTCTGCAACACCTTACTGCGAATTATAATTTTACCAGTTTTATAAGAGATTCCAACACTGGCGCAAATTTATTGGTATACATCTAAAGGTGTGTGCAACGTGTAACCGCGTACTTTTAATGGTATCTGTCTGAAGGTGTGTGCAAAACATGTAAGCGCGTTT

Fln Alignment:

Contig17037___MGEKLGSRGLLILLAFVLCISFTAEAIGVNYGRMGDDLPPPSEVAKFLQTTMIDKVKLFDADPGVLKAFANTNIGVVVAVANDQIAALNKLPAAQDWVKENVAPFVPATNILAISVGNEILSTGNKVLISQLVPAMQNLHTALVGASLDKQIKVSTPHSLGILSASEPPSIGRFRRGYDRVILKPLLNFLRTTGAPFMINPYPYFGYTDKTLNYALFKPNQGVFDNNTGITYTNMFQAQLDAVYSAMKLLGFSDVDIVVAETGWPSVGDPDQTAVNVENALSYNGNLIKLVNSNAGTPLMPNKTFDTYIFSLFNEDLKPGPTAERNFGLFKPDMTMVYDVGLMKSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTDKSWCVAKPDADPNVLQDNIDYACGQGVDCSAIQAGGQCFTPNTVVAHATYAMNSYYQLTGRHSYDCDFAQTGVLTQEDPSYGTCVY
A9NVN4_______________MGEKLGSRGLFMQLVLVLCIFFTAEAIGVNYGRMGDNLPPPSEVAKFLQTTNIDKVKLFDADPSVLQAFADTNITVVVAVANDEIPALNKLPAAQDWVKKNVAPYVPATNIIAISVGNEILSTGNKVLISQLIPAMQNLHTALVGASLDKQIKVSTPHSLGILAASEPPSIGRFRRGYDRVILKPLLNFLRTTGAPFMINPYPYFGYTDKTLDYALFKPNAGVFDKNTGITYANMFQAQLDAVYSAMKLLGFSDVDIVVAETGWPSVGDPDQTAVNMANALSYNGNLINLVNSNAGTPLMPNKTFDTYIFSLFNEDLKPGPIAERNFGLFKPDMTMVYDVGLLKSESATPAPISTAPVTPTTPAPISTAPVTPTTPAPISTVPVTPTTPAPVTGTDKSWCVAKPDADPKVLQANIDYACGQGVDCSPIQSGGSCFTPNTVVAHATYAMNSYYQLTGRHSYDCDFAQTGFLTQEDPSYGVCVY

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1782	2	97			0.951554
2036	95		4		0.997494
2100			25	75	0.996473
2146		25		75	0.996473
2154		75		25	0.996473
2185		29	4	65	1.0
2189	5	2		91	0.99441
2248		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain