SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17024

Length: 1493 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene17024 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase n=1 Tax=Cucumis melo subsp. melo RepID=E5GC51_CUCME	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	0.0	-
Sma3	Plant peroxidase	IPR000823	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G21960.1	PRXR1 Peroxidase superfamily protein chr4:11646613-11648312 REVERSE LENGTH=330	75%
RefSeq	Arabidopsis thaliana	NP_567641.1	peroxidase 42 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002304909.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNP1

Fln msg:

Fln protein: MGKSEKMGLWVVLALALSAQLLQSQAYNVVSSSNATGSYSENGLVMNYYGDSCPQAEEIIAEQVRLLYKRHKNTAFSWLRNIFHDCAVESCDASLLLDSTRNSISEKETDRSFGLRNFRYLDTIKEAVERECPGVVSCADILVLSARDGVVSLGGPYIPLKTGRRDGRKSRADVVENYLPDHNESISTVLSRFKAMGIDTRGVVALLGAHSVGRTHCVKLVHRLYPEVDPTLDPGHVEHMKHKCPDAIPNPKAVQYVRNDRGTPMKLDNNYYVNLMDNKGLLIVDQQLYADSRTRPYVKKMAKSQEYFFKYFSRALTILSENNPLTGTRGEIRRQCSLKNKLHTKSKR*

Protein Length: 350

Fln nts: ATGGGGGAGTTCA_-_ATGGGGAAGAGCGAGAAGATGGGCCTGTGGGTAGTGCTGGCTTTGGCGCTCAGCGCGCAGTTGTTGCAGTCTCAGGCTTACAATGTGGTAAGTTCGAGCAATGCTACTGGGAGTTACAGTGAGAATGGATTGGTGATGAATTACTATGGGGACTCTTGCCCTCAGGCTGAAGAGATCATTGCTGAACAAGTACGCCTGCTGTACAAAAGACACAAGAACACTGCATTTTCGTGGCTTAGAAATATTTTCCATGACTGTGCTGTGGAGTCATGTGATGCATCGCTTCTGTTGGACTCAACAAGGAACAGCATATCAGAAAAGGAGACTGACAGGAGCTTCGGCCTTCGCAACTTTAGGTATTTGGATACCATCAAGGAAGCCGTGGAGAGGGAGTGCCCCGGGGTCGTTTCTTGCGCAGATATACTCGTTCTCTCTGCCAGAGATGGCGTTGTATCGTTGGGAGGGCCATACATTCCCCTGAAGACGGGAAGAAGAGATGGACGGAAGAGCAGAGCAGATGTGGTGGAGAATTACCTTCCCGATCACAATGAGAGCATCTCCACTGTTCTGTCTCGCTTCAAAGCCATGGGAATCGACACCCGTGGGGTTGTTGCACTGCTGGGGGCTCACAGTGTGGGGAGGACTCACTGCGTGAAGCTGGTGCACAGGCTGTACCCGGAAGTAGATCCGACACTGGACCCTGGGCACGTGGAGCACATGAAGCACAAGTGCCCGGACGCGATCCCCAACCCGAAGGCAGTGCAGTATGTGCGGAACGACCGGGGAACGCCTATGAAGCTGGACAACAACTACTACGTGAACCTGATGGACAACAAGGGGCTCCTCATAGTGGACCAGCAACTGTATGCAGATTCGAGGACCAGGCCGTATGTGAAGAAGATGGCAAAAAGCCAGGAATACTTCTTCAAATACTTCTCCCGGGCGCTCACCATCCTCTCTGAGAACAATCCTCTCACCGGCACTCGAGGAGAAATCCGTCGGCAGTGCTCGCTCAAAAACAAACTGCACACAAAAAGCAAGCGTTGA___GCGATAGCTCAATTCCGCAGTGATGGGAGTAATAGCGTGATGCCACAGTAGTGGGCATTTCATATATAAATTGCAGTTTGCGTTTTTATTAGATAATCATAATGGTGTGGTGTCACGGAAAGAGTTAACCAGTTATATATTGGGTATTTAATGCTTTCAGAGTAGCACGAGACTTAACGTGATAACACGGAGCTGGCAAATTCGGCATTAAATAATATTTTCCCGCTCCCGTATTATCTAGCTAAATGGCGTGCTGCTTTGAGGGCATTAAATACCCAATATATGACTGGTTAGGTCCAGCCTTGGTGTCACTATGTTTTGCGATCACGTCGATGAACTACAACCGAACCGTGGAACAGTAGGCTTGTTTCCTTATGTAAGCAGAACCTTTTATTATAAACAAAAAAACACAATCCTGTCTGTTAAAAAAACT

Fln Alignment:

Contig17024___MGLWVVXXXXXXXXXXXXXAYNVVSSSNATGSYSENGLVMNYYGDSCPQAEEIIAEQVRLLYKRHKNTAFSWLRNIFHDCAVESCDASLLLDSTRNSISEKETDRSFGLRNFRYLDTIKEAVERECPGVVSCADILVLSARDGVVSLGGPYIPLKTGRRDGRKSRADVVENYLPDHNESISTVLSRFKAMGIDTRGVVALLGAHSVGRTHCVKLVHRLYPEVDPTLDPGHVEHMKHKCPDAIPNPKAVQYVRNDRGTPMKLDNNYYVNLMDNKGLLIVDQQLYADSRTRPYVKKMAKSQEYFFKYFSRALTILSENNPLTGTRGEIRRQCSLKNKLHTKSKR
A9NNP1_______________MGRWVLLALALSAQLLQSQAYNVGSSSNTNGSYGENGLVMNYYGDSCPQAEEIIAEQVRLLYKRHKNTAFSWLRNIFHDCAVESCDASLLLDSTRKSISEKETDRSFGLRNFRYLDTIKEAVERECPGVVSCADILVLSARDGVVSLGGPYTPLKTGRRDGRKSRADVVENYLPDHNESISTVLSRFKAMGIDTRGVVALLGAHSVGRTHCVKLVHRLYPEVDPTLDPGHVEHMKHKCPDAIPNPKAVQYVRNDRGTPMKLDNNYYVNLMNNKGLLIVDQQLYADSRTRPYVKKMAKSQDYFFKYFARALTILSENNPLTGNRGEIRRQCSLRNKLHTISKR

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
631	20	80			0.996423
1064		2		97	0.972772
1232		2	97	0	0.999895
1474	0	0		28	1.0
1475	18	7			1.0
1476		8		91	1.0
1479		95		5	1.0
1481	1	91			1.0
1482	97		2		0.962263

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain