SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16933

Length: 2170 nt

UniGene Fasta

>sp_v3.0_unigene16933
CGTCGTGACCTTGGCTGTCACTCAGAGTAAAGATGCTGTCGAAATCAGTGCCTGGTTGGATTTCCTTTAGTCAATTGCTTGCTGAGTAAGTTGCTTAGGCAACAACCGATTTGAAATGACTTGTTTGTTCTCCTGAGAGCATAAATTCTCTCTTACCACCAGAAGATATCAGAGTTTGCGGGGTAAGAAAGTCGAAGAACAGGAGAAAGTATACTCGGAACAGAGCGAGAGATCCTGTGTTAGCTTTACTATGGAAGAACTAAATGTGCAGGAGAAAGCAGCTACTCTTGTGGGTGAAACCCACGAGAGTTTGAGCTCTTTGCTTTGCAACGATGAACGTGATTTCTTGATCAGAAATAATGGACACATGGTGAAAGTTGAAGAACTGGAAGGGAAATATGTGGGTCTGTACTTTTCTGCCCATTGGTGTCCTCCATGCAGGCATTTCACCCCCGTTTTGTCCGAAATCTATAAAAAAATATCGGAGAAGGAGGACTTCGAGATTGTCTTCATTTCTGCAGATCGTGATGAGAAGTCTTTTGAGGAATACCACCACACCATGCCATGGCTTGCCCTGCCATTCTCAGATGAGGATACGAGGAAAAAGCTTAATCAGGCTTTTCAGGTTGATGGCATTCCGTGCCTTGTTGTTCTGGACAAAGAGGGCAGACTTATAACCACTGAAGGTGTGGACATCATTGTAGAATATGGTGTTGAGGGTTATCCATTCACTGCAGAGAGACTTGATGAACTGAGGGCCAAAGATGAGGCCTTAAGGGCTGCACAGACGGTGGAGTCCCTTCTGCTGTCTGATGAACGAGATTTTGTCCTTGGCCATGGAGGAAGAAAGGTACCGGTAGCTGAGCTTGTGGGGAAGACTGTGGGTCTGTATTTCTCAGCCCACTGGTGTGGTCCCTGTAGAAATTTCACTCCACAACTTGTGGAGATTTATAATGAGCTTTTGAAGAGAGGGGAGGCCTTTGAGATTGTGTTTCTCTCGGGCGATGAAGGGGAGAAAGACTTCGAAGAGTATTATGCAGGCATGCCATGGCTAGCTTTGCCATTTGGAGACAACGCTGAAAAGAACTTGTCTCGCTACTTCCGAGTTCAGGGTATTCCAACTTTGATTATTTTAAGTCCAGAAGGGAAAACAATACAGACTGATGCAGTGGGCCTTATACGAGAATACGGGATAAGAGCTTACCCATTTACAAAAGAGCGGATGCATGAGCTTGAAGCGGAGGAGAAAGCCAAACGAGATGCACAAACCCTGGAGTCGCTCTTGGTTTCTGATGAGCGGGACTTTGTGATCAAGCATGGAGGTGCTCAGGTCCCAGTAGCTGAGCTTGTGGGGAAGACAGTTGCCTTCTATTTCTCTGCCCATTGGTGCCCCCCTTGCCGAGGTTTCACTCCAAAGCTTGTAAACGTATACAACGAACTCAAAGAAAGTGGAAAAGCATTTGAGATTATTTTCATTTCCAGGGACAAAAATCAAGAGGCTTTTGAGGATTACTACAAAAGCATGCCATGGTTGGCCCTTCCATTTGGAGATAAAACTAAGGATGATCTCTCTCGGCTTTTCCGTGTCAGAGGCATCCCATCCTTGGCTGTGGTAGGTCCAGATGGAAAAACTGTGACAGATAATGCCAGAAGTGCAGTGTCCAGCTTCGGAGCCAAGGCTTATCCCTTCACTGATGCTCATCTTGAAGGGCTGAAGAATAAAATTGAGACTGAAATAAAAGAGCTTGCTGAGAAATCAGCTAAGGAGATAAGCTACAGCCAGCATGAACACTCCCTTGTATTGACCCAGAGACGTGCATTTAGATGTGATGGTTGCAACGAAGGTGGCGTTTTATGGTCCTATTATTGCAAAGATTGTGACTACGATCTTCATCTGACTTGTGCTTTGAAGGAACAACAGGAGTTGAAGCAGGACAAGGGACAAGACACAGATGCTGCAATTGACGAGAACTGCAAACCTGCAGGGGTTATCTGTGATGGAGATGTTTGTTACCAGGCTAAAGCTTGATGATAATTCCACGTGGGTTTTCTCTAGTAATTTCTGTTCAATCGTCTTGTTATTTCATAGTTCAAAGTGTCAACGCTGTATGGACATTTGACATGAAAATAATATTGGAGTAAATAAATATTTATATTTATATTTATGGTG

Ace file of the UniGene sp_v3.0_unigene16933

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleoredoxin, putative n=1 Tax=Ricinus communis RepID=B9SHA0_RICCO	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	antioxidant activity	GO:0016209	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	-
Sma3	C1-like	IPR011424	-	-
Sma3		IPR017936	-	-
Sma3		IPR012335	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G60420.1	DC1 domain-containing protein chr1:22261978-22264243 FORWARD LENGTH=578	48%
RefSeq	Arabidopsis thaliana	NP_564756.1	putative nucleoredoxin 1 [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002314534.1	predicted protein [Populus trichocarpa]	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXQ2

Fln msg:

Fln protein: MEELNVQEKAATLVGETHESLSSLLCNDERDFLIRNNGHMVKVEELEGKYVGLYFSAHWCPPCRHFTPVLSEIYKKISEKEDFEIVFISADRDEKSFEEYHHTMPWLALPFSDEDTRKKLNQAFQVDGIPCLVVLDKEGRLITTEGVDIIVEYGVEGYPFTAERLDELRAKDEALRAAQTVESLLLSDERDFVLGHGGRKVPVAELVGKTVGLYFSAHWCGPCRNFTPQLVEIYNELLKRGEAFEIVFLSGDEGEKDFEEYYAGMPWLALPFGDNAEKNLSRYFRVQGIPTLIILSPEGKTIQTDAVGLIREYGIRAYPFTKERMHELEAEEKAKRDAQTLESLLVSDERDFVIKHGGAQVPVAELVGKTVAFYFSAHWCPPCRGFTPKLVNVYNELKESGKAFEIIFISRDKNQEAFEDYYKSMPWLALPFGDKTKDDLSRLFRVRGIPSLAVVGPDGKTVTDNARSAVSSFGAKAYPFTDAHLEGLKNKIETEIKELAEKSAKEISYSQHEHSLVLTQRRAFRCDGCNEGGVLWSYYCKDCDYDLHLTCALKEQQELKQDKGQDTDAAIDENCKPAGVICDGDVCYQAKA*

Protein Length: 594

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAGTAAAGATGCTGTCGAAATCAGTGCCTGGTTGGATTTCCTTTAGTCAATTGCTTGCTGAGTAAGTTGCTTAGGCAACAACCGATTTGAAATGACTTGTTTGTTCTCCTGAGAGCATAAATTCTCTCTTACCACCAGAAGATATCAGAGTTTGCGGGGTAAGAAAGTCGAAGAACAGGAGAAAGTATACTCGGAACAGAGCGAGAGATCCTGTGTTAGCTTTACT_-_ATGGAAGAACTAAATGTGCAGGAGAAAGCAGCTACTCTTGTGGGTGAAACCCACGAGAGTTTGAGCTCTTTGCTTTGCAACGATGAACGTGATTTCTTGATCAGAAATAATGGACACATGGTGAAAGTTGAAGAACTGGAAGGGAAATATGTGGGTCTGTACTTTTCTGCCCATTGGTGTCCTCCATGCAGGCATTTCACCCCCGTTTTGTCCGAAATCTATAAAAAAATATCGGAGAAGGAGGACTTCGAGATTGTCTTCATTTCTGCAGATCGTGATGAGAAGTCTTTTGAGGAATACCACCACACCATGCCATGGCTTGCCCTGCCATTCTCAGATGAGGATACGAGGAAAAAGCTTAATCAGGCTTTTCAGGTTGATGGCATTCCGTGCCTTGTTGTTCTGGACAAAGAGGGCAGACTTATAACCACTGAAGGTGTGGACATCATTGTAGAATATGGTGTTGAGGGTTATCCATTCACTGCAGAGAGACTTGATGAACTGAGGGCCAAAGATGAGGCCTTAAGGGCTGCACAGACGGTGGAGTCCCTTCTGCTGTCTGATGAACGAGATTTTGTCCTTGGCCATGGAGGAAGAAAGGTACCGGTAGCTGAGCTTGTGGGGAAGACTGTGGGTCTGTATTTCTCAGCCCACTGGTGTGGTCCCTGTAGAAATTTCACTCCACAACTTGTGGAGATTTATAATGAGCTTTTGAAGAGAGGGGAGGCCTTTGAGATTGTGTTTCTCTCGGGCGATGAAGGGGAGAAAGACTTCGAAGAGTATTATGCAGGCATGCCATGGCTAGCTTTGCCATTTGGAGACAACGCTGAAAAGAACTTGTCTCGCTACTTCCGAGTTCAGGGTATTCCAACTTTGATTATTTTAAGTCCAGAAGGGAAAACAATACAGACTGATGCAGTGGGCCTTATACGAGAATACGGGATAAGAGCTTACCCATTTACAAAAGAGCGGATGCATGAGCTTGAAGCGGAGGAGAAAGCCAAACGAGATGCACAAACCCTGGAGTCGCTCTTGGTTTCTGATGAGCGGGACTTTGTGATCAAGCATGGAGGTGCTCAGGTCCCAGTAGCTGAGCTTGTGGGGAAGACAGTTGCCTTCTATTTCTCTGCCCATTGGTGCCCCCCTTGCCGAGGTTTCACTCCAAAGCTTGTAAACGTATACAACGAACTCAAAGAAAGTGGAAAAGCATTTGAGATTATTTTCATTTCCAGGGACAAAAATCAAGAGGCTTTTGAGGATTACTACAAAAGCATGCCATGGTTGGCCCTTCCATTTGGAGATAAAACTAAGGATGATCTCTCTCGGCTTTTCCGTGTCAGAGGCATCCCATCCTTGGCTGTGGTAGGTCCAGATGGAAAAACTGTGACAGATAATGCCAGAAGTGCAGTGTCCAGCTTCGGAGCCAAGGCTTATCCCTTCACTGATGCTCATCTTGAAGGGCTGAAGAATAAAATTGAGACTGAAATAAAAGAGCTTGCTGAGAAATCAGCTAAGGAGATAAGCTACAGCCAGCATGAACACTCCCTTGTATTGACCCAGAGACGTGCATTTAGATGTGATGGTTGCAACGAAGGTGGCGTTTTATGGTCCTATTATTGCAAAGATTGTGACTACGATCTTCATCTGACTTGTGCTTTGAAGGAACAACAGGAGTTGAAGCAGGACAAGGGACAAGACACAGATGCTGCAATTGACGAGAACTGCAAACCTGCAGGGGTTATCTGTGATGGAGATGTTTGTTACCAGGCTAAAGCTTGA___TGATAATTCCACGTGGGTTTTCTCTAGTAATTTCTGTTCAATCGTCTTGTTATTTCATAGTTCAAAGTGTCAACGCTGTATGGACATTTGACATGAAAATAATATTGGAGTAAATAAATATTTATATTTATATTTATGGTG

Fln Alignment:

Contig16933___EKAATLVGETHESLSSLLCNDERDFLIRNNGHMVKVEELEGKYVGLYFSAHWCPPCRHFTPVLSEIYKKISEKEDFEIVFISADRDEKSFEEYHHTMPWLALPFSDEDTRKKLNQAFQVDGIPCLVVLDKEGRLITTEGVDIIVEYGVEGYPFTAERLDELRAKDEALRAAQTVESLLLSDERDFVLGHGGRKVPVAELVGKTVGLYFSAHWCGPCRNFTPQLVEIYNELLKRGEAFEIVFLSGDEGEKDFEEYYAGMPWLALPFGDNAEKNLSRYFRVQGIPTLIILSPEGKTIQTDAVGLIREYGIRAYPFTKERMHELEAEEKAKRDAQTLESLLVSDERDFVIKHGGAQVPVAELVGKTVAFYFSAHWCPPCRGFTPKLVNVYNELKESGKAFEIIFISRDKNQEAFEDYYKSMPWLALPFGDKTKDDLSRLFRVRGIPSLAVVGPDGKTVTDNARSAVSSFGAKAYPFTDAHLEGLKNKIETEIKELAEKSAKEISYSQHEHSLVLTQRRAFRCDGCNEGGVLWSYYCKDCDYDLHLTCALKEQQEL-KQDKGQDTDAAIDENCKPAGVICDGDVCYQA
A9NXQ2_______________EKAVTQAGESHESLSSLLCSEERDFLIRNNGEKVKVEELEGKYVGLYFSAHWCPPCRYFTPVLSEIYKKLLEKGDFEIVFISADRDEKSFEEYHHTMPWLALPFSDENTRKKLDQVFKVDGIPCLVFLDKEGRAITTEGVETIGEYGVEAYPFTAERIDELKAKEEALRAAQTVESLLLSDERDFVLGHEGTQVPVAELAGKTVGLYFSAHWCGPCRSFTPQLVEIYNELLKKGEAFEIVFLSRDKEEKAFEEYYASMPWLALPFADNTQKKLSRYFRIEGIPTLIILGPDGKTIRNDAVGLIREYGIRAYPFTKERLDDLEAEEKAKREAQTLESVLVSDERNFVIKHGGAQVLVSELVGKTVALYFSAHWCPPCRGFTPKLIQVYNELKERGEAFEIVFISSDKDQEAFEDYYKSMPWLALPFGDKTKKDLSRIFRVRGIPSLIVVGPDGKTLTDNARGAVSTHGAKAYPFTDAHLE----RLEKEMEELVEKSPKEIRYSQHEHPLVLTRRPVFCCDGCNEGGTAWSYYCKDCDYDLHLTCAFKDQPDLGNQDKGQGTDAAMDENCKPAGVICDGDVCYKA

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1813	96		3		0.987242
1829	96		3		0.984346
1902	97		2		0.977151
1979	2	97			0.971188
2162		10		90	0.999898
2164		14		85	0.993533
2168		20		80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
2147	2166	ATATTT ATATTT ATATTT AT	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain