SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16868

Length: 1101 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene16868

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor-like protein kinase 4 n=2 Tax=Arabidopsis RepID=F4JH44_ARATH	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	S-receptor kinase, putative	-	-	6.432e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	8.223e-11	-

Source	Gene names
Sma3	17L07.5; AT4g00340; AT4g32300; A_IG005I10.19; At1g34300; At2g19130; At4g32300; At5g20050; B1099D03.46; B1099D03.51; B1423D04.25; DUPR11.18; F10M6.60; F23M19.5; F5I10.19; F8B4.10; GSVIVT00000338001; GSVIVT00001733001; GSVIVT00001735001; GSVIVT00003755001;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	peptidoglycan-based cell wall	GO:0009274	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	phospholipase C activity	GO:0004629	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3		GO:0007242	Biological Process	-
Sma3	peptidoglycan biosynthetic process	GO:0009252	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Phospholipase C, phosphatidylinositol-specific , X domain	IPR000909	-	-
Sma3	Glycosyl transferase, family 51	IPR001264	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3		IPR001899	-	-
Sma3	PAN-1 domain	IPR003014	-	-
Sma3	Long hematopoietin receptor, Gp130 family 2, conserved site	IPR003529	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G00340.1	RLK4 receptor-like protein kinase 4 chr4:148958-151496 FORWARD LENGTH=818	64%
RefSeq	Arabidopsis thaliana	NP_567172.4	receptor-like protein kinase 4 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002319938.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NM60

Fln msg: your sequence is shorter than subject: 349 - 431

Fln protein: QRNPEEHSTSEEGFSGMTLTMFAYKDLHIATRNFSEKLGSGGFGSVYKGTLAGSIPIAVKKLERPEGGEKQFRMEVSTIGMIQHVNLVRLRGFCSEGDRRLLVYDYMPNGSLNTFLFREHKKFLDWKTRFQIALGAARAIAYLHEGCRDCIVHCDIKPENILLDEDFNARVSDFGMAKLIGRDFSRVLTTMRGTRGYLAPEWISGLPITAKADVYSFGMTLLEIMGGRRNIESSNVESEKWFFPTWAAKQIRLGNILELVDDRLGKDIDVEEVRRTAMVAIWCIQDGEGSRPRMGTIVKMLEGVVDVLTPPIPRTLQALMDENAETQVMTMDSDSSSLVSSPSITVKF*

Protein Length: 350

Fln nts: CAAAGGAATCCAGAAGAGCATTCCACTTCTGAGGAGGGTTTTAGTGGGATGACGCTGACTATGTTTGCATATAAAGACCTTCATATTGCGACCAGGAATTTTAGTGAGAAACTGGGGAGTGGAGGATTTGGATCTGTTTACAAGGGAACCCTCGCAGGGTCCATCCCAATAGCTGTCAAGAAATTGGAAAGACCCGAAGGAGGTGAGAAGCAATTCCGGATGGAGGTGAGTACTATTGGAATGATCCAGCATGTAAATCTTGTTCGTCTTAGGGGTTTCTGTTCAGAGGGAGATCGGAGACTGTTGGTCTATGATTACATGCCCAATGGGTCTTTGAATACATTTTTGTTCAGAGAACATAAGAAGTTTCTGGACTGGAAGACCCGGTTTCAAATTGCACTAGGTGCAGCTCGGGCAATTGCATACCTGCATGAAGGATGCAGGGATTGTATCGTCCATTGTGATATCAAGCCAGAAAACATTCTCTTGGATGAAGATTTCAATGCCAGAGTCTCGGATTTTGGTATGGCAAAACTTATTGGCAGGGATTTTAGCCGTGTTTTGACAACAATGCGCGGTACTAGAGGTTATCTAGCTCCAGAATGGATATCTGGTCTGCCAATTACAGCCAAGGCTGATGTATACAGCTTTGGAATGACACTCCTAGAAATCATGGGAGGTCGCAGAAACATAGAGTCAAGCAATGTTGAATCTGAAAAATGGTTTTTCCCAACTTGGGCTGCCAAGCAGATCCGCCTGGGAAACATTCTGGAGCTTGTAGATGACCGCCTTGGGAAGGACATTGATGTAGAAGAGGTTAGGAGAACAGCAATGGTAGCTATCTGGTGCATTCAGGATGGTGAGGGTTCAAGGCCAAGAATGGGCACGATTGTAAAGATGCTAGAAGGAGTTGTGGATGTTTTGACTCCCCCAATACCAAGAACTCTACAAGCCCTCATGGACGAAAATGCTGAGACGCAAGTGATGACCATGGATTCTGATTCATCATCTCTTGTTTCTTCTCCTTCTATCACGGTTAAATTTTAA___TGCTTCCAAAGATCTGCAAGATTGTTCAATTGGTTTCAAAGGTTGAAAAAGTTT

Fln Alignment:

Contig16868___QRNPEEHSTSEEGFSGMTL-------TMFAYKDLHIATRNFSEKLGSGGFGSVYKGTLAGSIPIAVKKL-ERPEGGEKQFRMEVSTIGMIQHVNLVRLRGFCSEGDRRLLVYDYMPNGSLNTFLFREHKKFLDWKTRFQIALGAARAIAYLHEGCRDCIVHCDIKPENILLDEDFNARVSDFGMAKLIGRDF-SRVLTTMRGTRGYLAPEWISGLPITAKADVYSFGMTLLEIMGGRRNIESSNVESEKWFFPTWAAKQIRLGNILELVDD--RLGKDIDVEEVRRTAMVAIWCIQDGEGSRPRMGTIVKMLEGVVDVLTPPIPRTL
A9NM60_______________KRSVPEKIESDNKFSGEYLKNLTGLPAIFTYETIEIATGGFSKEIGKGGFGTVYEGILEDDTLVAVKCLVNESRQGQAEFCAEIGTTSSINHSNLVRLHGICVEGQHRILVYEFMANGSLDRWLF-DSDKWLDWKTRYSIALDTARGLAYLHEESRLCILHLDVKPQNILVDEYFKAKVSDFGMARCLKRDIESHLVTGVRGTPGYMAPEWLLGAGITSKSDVFSYGMVLLEIISGRRNVDNTR-DSDNWYFPSIAINKARQDKMEEIIETGLEMKRPEDLEEAYRLIKTALWCVQSNSGLRPSMGTVVRILEGDLEILDPPSEWTL

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
147	66			33	0.997452
205	33		66		0.997452
223			66	33	0.997452
224	66			33	0.997452
225		33	66		0.997452
227		33		66	0.997452
295	33	66			0.997452
342	66		33		0.997452
601	66		33		0.997452
673		80	20		0.995493
674	80		20		0.995493
675			20	80	0.995493
749		83	16		0.994512
750	83			16	0.994512
752	83		16		0.994512
753		16		83	0.994512
755		83		16	0.994512
756			16	16	0.988813
758		83	16		0.994512
762			83	16	0.994512
763		16	83		0.994512
765	83	16			0.994512
766	83			16	0.994512
796		12	87		0.992554
798	87			12	0.992554
799	87	12			0.992554
804	87	12			0.992554
808	87	12			0.992554
813		12	87		0.992554
815	87	12			0.992554
816			87	12	0.992554
817	87	12			0.992554
818	12		87		0.992554
878	87			12	0.992554
923			20	60	0.99255
954			60	40	1.0
959		80		20	0.995493
974		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain