SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16816

Length: 570 nt

UniGene Fasta

>sp_v3.0_unigene16816
GCAGCTCCCACTTATCGCGACTGTCTTTAGATCAAATGGTGGATGCAGTTCGCTTCGTGACAGAGCTTCGGGAGACGTTTTCTTCCGGTCGGACCAGAAGCTACGAATGGAGAATTACTCAGCTCAAGCAAACCTTGAAGCTGATAGACGAACACGATGGTCAGATTGCAGAAGCTCTCCATCAGGATTTAAGCAAGCCTCAATTCGAGTCCTTCATTTCAGAGATATCTCTTGTAAAACAATCATGCCAAGTAGCGATCAAAGAGCTAAAGAGTTGGATGACCCCACAAAAGGTGTCAACAAACATAACTGTCTTCCCCTCATCAGCTGAAATTGTGCCAGAGCCATTGGGTGCAGCACTGATTATTTCTGCCTGGAATTATCCATTTTTGTTGTCTATGGATCCAGTGATAGGAGCTATTGCTGCTGGAAATGTAGTGGTTTTAAAGCCTTCTGAAGTGGCCCCTGCGACATCTTCTTTGCTTGCAAGGCTTATATCACAATATCTAGATAATGCTGCAATTCGTGTTGTTGAAGGCAGTGTTGCGGAGACAACATGTCTGTTGGAAC

Ace file of the UniGene sp_v3.0_unigene16816

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aldehyde dehydrogenase n=1 Tax=Picea sitchensis RepID=B8LML9_PICSI	-	-	0.0	74%
FL-Next	sp=Aldehyde dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Variable substrate	-	-	1.126e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	Aldehyde dehydrogenase (NAD(+)).	EC:1.2.1.3	-	1.424e-11	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	1.424e-11	%
Sma3	Pentose and glucuronate interconversions	00040	1.424e-11	%
Sma3	Ascorbate and aldarate metabolism	00053	1.424e-11	%
Sma3	Fatty acid metabolism	00071	1.424e-11	%
Sma3	Valine, leucine and isoleucine degradation	00280	1.424e-11	%
Sma3	Lysine degradation	00310	1.424e-11	%
Sma3	Arginine and proline metabolism	00330	1.424e-11	%
Sma3	Histidine metabolism	00340	1.424e-11	%
Sma3	Tryptophan metabolism	00380	1.424e-11	%
Sma3	beta-Alanine metabolism	00410	1.424e-11	%
Sma3	Glycerolipid metabolism	00561	1.424e-11	%
Sma3	Pyruvate metabolism	00620	1.424e-11	%
Sma3	Chloroalkane and chloroalkene degradation	00625	1.424e-11	%
Sma3	Propanoate metabolism	00640	1.424e-11	%
Sma3	Limonene and pinene degradation	00903	1.424e-11	%
Sma3	Metabolic pathways	01100	1.424e-11	%
Sma3	Biosynthesis of secondary metabolites	01110	1.424e-11	%

Source	Gene names
Sma3	ALD3; ALDH; ALDH1; ALDH3A; ALDH3B; ALDH3C; ALDH3D; ALDH3E; ALDH3H1; ALDH3I1; At1g44170; At4g34240; F10M10.10; GSVIVT00015410001; GSVIVT00019283001; GSVIVT00024617001; GSVIVT00036847001; H0115B09.6; LOC_Os11g08300; LOC_Os12g07810; OSJNBa0011L07.12; Os02g06

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	amyloplast	GO:0009501	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	aldehyde dehydrogenase (NAD) activity	GO:0004029	Molecular Function	-
Sma3	aldehyde dehydrogenase [NAD(P)+] activity	GO:0004030	Molecular Function	-
Sma3	cellular aldehyde metabolic process	GO:0006081	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to desiccation	GO:0009269	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Aldehyde dehydrogenase NAD(P)-dependent	IPR012394	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase, C-terminal	IPR016163	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G34240.1	ALDH3I1, ALDH3 aldehyde dehydrogenase 3I1 chr4:16389801-16392633 FORWARD LENGTH=550	65%
RefSeq	Arabidopsis thaliana	NP_974679.1	aldehyde dehydrogenase 3I1 [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002306641.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LML9

Fln msg: Distance to subject end: 299 aas, your sequence is shorter than subject: 189 - 556

Fln protein: SSHLSRLSLDQMVDAVRFVTELRETFSSGRTRSYEWRITQLKQTLKLIDEHDGQIAEALHQDLSKPQFESFISEISLVKQSCQVAIKELKSWMTPQKVSTNITVFPSSAEIVPEPLGAALIISAWNYPFLLSMDPVIGAIAAGNVVVLKPSEVAPATSSLLARLISQYLDNAAIRVVEGSVAETTCLLE

Protein Length: 190

Fln nts: GCAGCTCCCACTTATCGCGACTGTCTTTAGATCAAATGGTGGATGCAGTTCGCTTCGTGACAGAGCTTCGGGAGACGTTTTCTTCCGGTCGGACCAGAAGCTACGAATGGAGAATTACTCAGCTCAAGCAAACCTTGAAGCTGATAGACGAACACGATGGTCAGATTGCAGAAGCTCTCCATCAGGATTTAAGCAAGCCTCAATTCGAGTCCTTCATTTCAGAGATATCTCTTGTAAAACAATCATGCCAAGTAGCGATCAAAGAGCTAAAGAGTTGGATGACCCCACAAAAGGTGTCAACAAACATAACTGTCTTCCCCTCATCAGCTGAAATTGTGCCAGAGCCATTGGGTGCAGCACTGATTATTTCTGCCTGGAATTATCCATTTTTGTTGTCTATGGATCCAGTGATAGGAGCTATTGCTGCTGGAAATGTAGTGGTTTTAAAGCCTTCTGAAGTGGCCCCTGCGACATCTTCTTTGCTTGCAAGGCTTATATCACAATATCTAGATAATGCTGCAATTCGTGTTGTTGAAGGCAGTGTTGCGGAGACAACATGTCTGTTGGAAC

Fln Alignment:

Contig16816___SLDQMVDAVRFVTELRETFSSGRTRSYEWRITQLKQTLKLIDEHDGQIAEALHQDLSKPQFESFISEISLVKQSCQVAIKELKSWMTPQKVSTNITVFPSSAEIVPEPLGAALIISAWNYPFLLSMDPXXXXXXXXXXXXLKPSEVAPATSSLLARLISQYLDNAAIRVVEGSVAETTCLLE
B8LML9_______________SLSEMPIADAIATQLRETFTCGSTRSYEWRMSQLEQILKLTDENQTQITEALHQDMGKPVFESFISEISLTKSSCKVAIKELKSWMTPQKVSTTITVFPSSAEIVPEPLGAVLIISAWNYPFLLSMDPVIGAIAAGNVVVLKPSEVAPATSSLLARLIPRYLDNSAVRVVEGSVVETTSLLE

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
158			66	33	0.997452
159	66		33		0.997452
160		33	66		0.997452
164	66		33		0.997452
168	66		33		0.997452
172	50	50			1.0
219			33	66	0.997452
239	66	33			0.997452
241	66	33			0.997452
245	66		33		0.997452
501		85	14		0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain