SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16775

Length: 630 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene16775

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PRE87 protein n=1 Tax=Pinus radiata RepID=O65014_PINRA	-	-	0.0	95%
FL-Next	tr=PRE87 protein; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	95%
Sma3	Myoinositol oxygenase, putative	-	-	8.619e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Inositol oxygenase.	EC:1.13.99.1	-	4.372e-32	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		4.372e-32	%
Sma3	Inositol phosphate metabolism	00562		4.372e-32	%

Source	Gene names
Sma3	At1g14520; At2g19800; At4g26260; At5g56640; F14L17.30; F6F22.17; GSVIVT00016624001; GSVIVT00034252001; GSVIVT00034254001; LOC_Os06g36560; MIK19.9; MIOX; MIOX1; MIOX2; MIOX4; MIOX5; Os06g0561000; OsI_23379; OsJ_21699; P0456F09.5; P0528E12.30; PHYPADRAFT_58

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	inositol oxygenase activity	GO:0050113	Molecular Function	-
Sma3	inositol catabolic process	GO:0019310	Biological Process	-
Sma3	L-ascorbic acid biosynthetic process	GO:0019853	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Inositol oxygenase	IPR007828	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G19800.1	MIOX2 myo-inositol oxygenase 2 chr2:8531106-8533354 REVERSE LENGTH=317	73%
RefSeq	Arabidopsis thaliana	NP_565459.1	inositol oxygenase [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002311571.1	predicted protein, partial [Populus trichocarpa]	77%

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
182		33	66		0.997452
192	75	25			0.996473
198	75			25	0.996473
199		80	20		0.995493
200			20	80	0.995493
201		20		80	0.995493
202	20	20	60		0.99255
203		80	20		0.995493
207	80	20			0.995493
208		20		80	0.995493
209			80	20	0.995493
210	80			20	0.995493
211			20	80	0.995493
213	80	20			0.995493
214	80			20	0.995493
216	80			20	0.995493
217		20		80	0.995493
219	80	20			0.995493
220			80	20	0.995493
221		20	80		0.995493
424			16	83	0.994512
460		16		83	0.994512
464	80		20		0.995493
474		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain