SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16767

Length: 1715 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene16767

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS-LRR disease resistance protein homologue n=2 Tax=Hordeum vulgare RepID=Q84KC6_HORVU	-	-	0.0	40%
FL-Next	sp=Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	25%
Sma3	NBS/LRR	-	-	1.272e-08	-

Source	Gene names
Sma3	At1g69550; At3g04220; F10D13_24; PHYPADRAFT_132267; T6K12.16; rga S-9201;

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O23530

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 116 aas, your sequence is shorter than subject: 421 - 1301

Fln protein: DENDNPFVYFLPLKNTNILQAPSKLRELEIQAPLSSIPKSIGKLKHLQRMVIGPATEYSFEEDKVNLTKLPEEFCLMQSLKALDLRRCSEIKSLPESFGNLTNLQHIVLTKCNKLDTLPDSFGNLNNLQQIELFECQALKRLPNSFGKLNNLQQIQLVTCQAFESLPDSFGNLTKLQQIQLSNFPALKSLPESFGNLTNLLQIKLSWCPTLERLPDSFGKLIKLQHLDLDSCTNLTMSSETLGNISTLQYINLSNCGKIEVFPPQVAHQRSLKMLYMRGTMLKELPSEIGELSDLEVLDVGPLLDTLPSSLCNLKNLKKLQLYVCKGLKCLPVLLGDLKNLKELQLHKCKELACLPPSLGQLAQLTELRVIDCPLICELPFKEVKGETLSDLDSSIRYCILPRLQLLEVAGIGDIRGVIC*

Protein Length: 422

Fln nts: GATGAGAACGATAATCCATTTGTATATTTTTTACCGTTGAAAAACACAAACATTTTGCAGGCACCTTCAAAGTTACGGGAGTTGGAGATTCAGGCTCCCCTTTCGAGCATTCCAAAGTCTATAGGGAAGTTGAAGCACTTACAACGGATGGTGATTGGCCCTGCTACTGAATACTCATTTGAGGAGGACAAGGTCAATTTGACAAAATTGCCAGAAGAATTTTGTCTTATGCAGTCGTTAAAAGCATTAGACTTAAGAAGATGCTCAGAAATAAAGTCACTTCCTGAGAGCTTTGGTAACTTAACCAACCTCCAACACATCGTTTTGACAAAGTGCAATAAATTGGATACATTGCCAGATTCTTTTGGTAATTTAAACAATCTCCAACAAATTGAGCTGTTTGAGTGCCAAGCTTTGAAGAGGCTGCCAAATTCATTTGGTAAGTTGAACAATCTCCAACAGATTCAATTGGTTACGTGTCAAGCTTTCGAGAGCCTGCCAGATTCCTTTGGCAATTTAACCAAACTCCAACAAATTCAGCTATCTAATTTCCCAGCCTTGAAGAGCCTTCCAGAATCCTTTGGTAATTTAACCAACCTCCTACAGATCAAGCTGTCCTGGTGCCCCACCTTGGAAAGGTTGCCAGATTCCTTTGGTAAACTAATTAAACTCCAACATCTTGATTTGGACTCTTGCACTAATTTAACCATGTCAAGCGAAACATTAGGAAATATAAGCACGCTTCAGTACATAAATCTCTCTAATTGCGGGAAAATTGAAGTGTTCCCTCCCCAGGTGGCACATCAGAGGTCGCTTAAAATGTTATATATGAGAGGTACAATGTTAAAAGAACTGCCAAGTGAAATTGGAGAGTTAAGTGATTTGGAAGTTCTGGATGTAGGACCTTTGCTGGACACTCTGCCGTCTTCACTATGTAATTTAAAGAACTTGAAGAAATTGCAGCTCTATGTATGTAAGGGATTGAAATGTTTGCCGGTTTTGCTGGGTGACTTAAAAAACTTGAAGGAATTGCAACTTCATAAATGCAAGGAATTAGCATGTTTGCCGCCTTCTCTTGGACAGTTGGCCCAGTTGACTGAGTTAAGGGTAATTGATTGTCCATTGATATGCGAACTGCCATTTAAGGAGGTGAAAGGAGAAACATTGAGTGATTTGGACTCTTCCATTCGCTACTGCATACTTCCACGGCTCCAACTGTTAGAGGTTGCAGGGATAGGGGATATCAGAGGTGTCATTTGCTGAAGGTGTTTGCTTCAACCTTCGCGATCTTACAGTGTCTTATTGTAATAATGTGGAGGAGGTTGGAACATTGCCAACTACACTTGTAAATTTATCATTGAAGCTTTGTGATAATTTGACAAAAATAGATACAATATGCCATCTTCCAAAACTTCAAAAGCTAGCAATTGCTAGTTGCAAGAAATTGGAAGAGTTGCCATGTATGGAATCATTGTTATCTTTGAGGTATTTGAACACAAGTGGGTGTGTGAGGTTGAAGAGCATAGGGGGGTTGGGGCAGCTGTCACAACTTCAACAACTATCTGTTAGTGGGTGTTCCGAGTTACAGGAGGTGGAAGACATCCAACATTGTATGTCATTGCAGAATCTGTATGTTGGAGACTGTCCCAAACTGCAACAAACAGTTTTAAACATGTCAGGTGTTAGATGGCGTTTAATTAATAAATAATAAATGC

Fln Alignment:

Contig16767___NILQAPSKLRELEIQ-APLSSIPKS---------IGKLKHLQRMVIGPATEYSFEEDKV----NLTKLPEEFCLMQSLKALDLRRCSEIKSLPESFGNLTNLQHIVLTKCNKLDTLPDSFGNLNNLQQIELFECQAL------------------------------KRLPNSFGKLNNL----------QQIQLVTCQAF--ESLPDSFGNLTKLQQIQLSNFPALKSLPESFGNLTNLLQIKLSWCPTLERLPDSFGKLIKLQHLDLDSCTNLTMSSETLGNISTLQYINLSNCGKIEVFPPQVAHQRSLKMLYMRGTMLKELPSEIGEL-----------SDLEVLDVGPLLDTXXXXXXXXXXXXXXXXYVCKGLKCLPVL---------LGDLKNLKELQLHKCKELACLPPSLGQLAQLTELRVIDCPLICELPFKEVKGETLSDLDSS
O23530_______________SLVYLPLKLRLLDWDDCPLKSLPSTFKAEYLVNLIMKYSKLEKLWEGTLPLGSLKEMNLRYSNNLKEIPD-LSLAINLEELDLVGCKSLVTLPSSIQNATKLIYLDMSDCKKLESFPTDL-NLESLEYLNLTGCPNLRNFPAIKMGCSDVDFPEGRNEIVVEDCFWNKNLPAGLDYLDCLTRCMPCEFRPEQLAFLNVRGYKHEKLWEGIQSLGSLEGMDLSESENLTEIPD-LSKATKLESLILNNCKSLVTLPSTIGNLHRLVRLEMKECTGLEVLPTDV-NLSSLETLDLSGCSSLRSFP---LISTNIVWLYLENTAIEEIPSTIGNLHRLVRLEMKKCTGLEVLPTDVNLSSLETLDLSGCSSLRSFPLISESIKWLYLENTAIEEIPDLSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLPI-DVNLSSLMILDLS

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1276	16			83	0.994512
1277		16	83		0.994512
1278	16	83			0.994512
1290		75		25	0.996473
1379	66		33		0.997452
1422	50		50		1.0
1429	25		50		0.995533
1435	25		75		0.996473
1436		50	25	25	0.995533
1531	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain