SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16667

Length: 1923 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene16667

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CTR1-like protein kinase n=1 Tax=Rosa hybrid cultivar RepID=Q93XL9_ROSHC	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Map3k delta-1 protein kinase, putative	-	-	2.054e-26	-

Source	ECs	Term	Type	e value	Identity
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	4.801e-12	-

Source	Gene names
Sma3	AT4g23050; AT4g24480; AT5G03730; At1g18160; At1g67890; At1g73660; At2g31010; At3g06620; At3g06630; At3g06640; At4g23050; At4g24480; At5g03730; At5g11850; At5g49470; B1131G07.13; CHLREDRAFT_102541; CTR; CTR1; CTR2; CTR3; CTR4; EDR1; ER50; F14F18_20; F17C15

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	myosin complex	GO:0016459	Cellular Component	-
Sma3	two-component sensor activity	GO:0000155	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	motor activity	GO:0003774	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	actin filament binding	GO:0051015	Molecular Function	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3		IPR000173	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	PAS fold	IPR013767	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Dil domain	IPR018444	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G03730.2	CTR1, SIS1, AtCTR1 Protein kinase superfamily protein chr5:974958-979660 REVERSE LENGTH=821	64%
RefSeq	Arabidopsis thaliana	NP_195993.1	serine/threonine-protein kinase CTR1 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002301123.1	predicted protein, partial [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8V0

Fln msg: your sequence is longer than subject: 480 - 319

Fln protein: MEDGTRVSFAASLNHIDTVPVVSSCVTCTGTEACAECSNATNFAGNLSVQNVAFLRLKEELRGTVDENEASHECIIPTGTNGTKYNNLPDLCPHVDREKAKILVDTKSNNDHFLQRPLQVNKKDDLHAKTNKDSFDHKCLEVHKQGVEHGKNGDTECLQETVLQSYKQIDEQSKLKDCLHRNNDKRLEEAGCVLQNRSTLELSLAMDGLEIPWEDLILKERIGAGSFGTVHHADWHGSDVAVKILIDQEIHEERLKEFLREVAIMKRLRHPNIVLFMGAVTKHPNLSIVTEYLPRGSLYRIIHRAGARELLDERRRLRMAFDVAKGINYLHRLNPPIVHRDLKSPNLLVDKTWTVKVCDFGLSRLKETHSFPPSLQLERLNGWLLKYSVMSHQMRNLMSIVLV*FVWELVTLQQPWSGLSPAQVVGAVGFQNRRLPIPEDMNPAIASIIESCWANDPRQRLSFSSIMDSLKPLVKSPSM*

Protein Length: 481

Fln nts: ACCCTTGCATGTCACCAGTGAGGTTAGATCATTGGCTAGGCAGTATGCCTCTGATAACAAATCATTGGGTGGTTTGTTAAATGTCCATCCTCACGTCAAGTGGCAGGTCCA_-_ATGGAGGATGGCACTAGAGTCTCATTTGCTGCCTCATTAAATCACATAGATACTGTTCCTGTGGTCTCCTCGTGCGTTACGTGCACAGGCACTGAAGCATGTGCAGAATGTTCTAATGCTACCAATTTTGCAGGCAACTTGTCAGTGCAGAATGTTGCATTTTTACGTTTGAAAGAAGAGTTGAGAGGCACAGTGGATGAAAATGAAGCTTCCCATGAATGTATAATTCCCACAGGCACAAATGGCACAAAATATAATAACCTACCAGATCTGTGTCCACATGTTGATCGAGAGAAAGCAAAGATACTTGTGGATACCAAATCTAATAATGATCACTTTCTGCAAAGACCCTTGCAGGTTAACAAGAAAGACGATTTACATGCAAAAACTAATAAAGATTCTTTTGATCATAAATGCTTGGAGGTTCACAAACAAGGAGTTGAACATGGGAAAAATGGCGATACAGAATGCCTTCAGGAAACTGTGTTGCAGTCTTACAAGCAAATAGATGAGCAATCTAAGTTAAAAGATTGTCTGCATAGAAACAATGATAAGAGACTTGAAGAGGCTGGGTGTGTGTTACAGAACAGATCAACACTTGAGCTGTCATTGGCAATGGATGGTCTGGAAATTCCATGGGAGGATCTTATTTTGAAGGAACGGATCGGTGCTGGTTCTTTCGGAACAGTGCATCATGCTGACTGGCATGGATCGGATGTTGCAGTGAAGATTCTCATAGACCAAGAAATACATGAAGAGCGACTCAAGGAATTTCTTAGAGAGGTTGCTATCATGAAACGTTTGCGACATCCAAATATTGTTCTTTTCATGGGCGCTGTAACAAAGCATCCAAATTTGTCTATAGTGACTGAGTATTTACCAAGGGGTAGCTTGTACCGTATTATTCATAGAGCAGGTGCAAGGGAGTTGCTGGATGAAAGACGTCGCTTACGTATGGCATTTGATGTGGCCAAGGGAATAAATTACTTGCATCGGCTTAACCCTCCCATTGTTCATCGAGACCTCAAGTCTCCTAATCTGCTGGTTGACAAGACATGGACTGTGAAGGTTTGTGATTTTGGCTTATCACGGTTAAAGGAAACACATTCATTTCCTCCAAGTCTGCAGCTGGAACGCCTGAATGGATGGCTCCTGAAGTACTCCGTGATGAGCCATCAAATGAGAAATCTGATGTCTATAGTTTTGGTGTAATTCGTGTGGGAGCTTGTCACTCTGCAACAACCTTGGAGTGGGTTAAGTCCAGCACAGGTTGTTGGAGCTGTTGGTTTTCAAAACAGGAGGCTTCCAATTCCGGAGGATATGAATCCTGCAATAGCTTCTATAATAGAGTCTTGTTGGGCTAATGACCCAAGACAGCGGCTGTCATTTTCAAGCATTATGGATTCTCTGAAGCCATTGGTAAAATCTCCATCCATGTAA___CCCATACATGGCATGGATTTGTCACTCTCGTAAGGGATGCACGTATCAAGAACATGCTTTTTCCCTTGATATACTATCTGCTGTTTGTTTTCCTTTGACAGAAAAGATTAAGATGCTAGATTTGTTGACATTGATGGCTTATTTTGAGGTGGATAGCTTCTTGAAGTGCAGTAGATTGTCTTGGATGTCAGTATAGCAGCAACTGTAAATTAAAACAATCTATTTATTCTTTCGAGTCATCCTCCCAATTTTTACCAACTGTATATTTGGGATTGTATACTGCTGAAAAAAGGGATTCAAGAGTTTTGACTCGTTAGTTCAGAAACAATATGGACCATTACTTTTCTTTTAATAATGATGAGTATGCCTTCC

Fln Alignment:

Contig16667___HRNNDKRLEEAGCVLQNRSTLELSLAMDGLEIPWEDLILKERIGAGSFGTVHHADWHGSDVAVKILIDQEIHEERLKEFLREVAIMKRLRHPNIVLFMGAVTKHPNLSIVTEYLPRGSLYRIIHRAGAXXXXXXXXXXXMAFDVAKGINYLHRLNPPIVHRDLKSPNLLVDKTWTVKVCDFGLSRLKETHSFPPSLQLERLNGWLLKYSVM---SHQMRNLMSIVLV*FVWELVTLQQPWSGLSPAQVVGAVGFQNRRLPIPEDMNPAIASIIESCWANDPRQRLSFSSIMDSLKPLVKSPSM*PIHGMDL
D5A8V0_______________NKMKEGRHDETDNLLSTKANLELSLSMDGLEIPWSDLVLKERIGAGSFGTVHHADWHGSDVAVKILIEQDFHEERLKEFLREVAIMKRLRHPNVVLFMGAVLSRPNLSIVTEYLPRGSLYRLIHRPGTREILDERRRLRMALDVAKGMNHLHRLNPPIVHRDLKSPNLLVDKTWTVKVCDFGLSRLK-ANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVI--LWELITLQQPWSGLNAAQVVGAVGFQNRRLQIPKDVKPDIAAIIEACWANDSRKRPSFASIMELLKPLVKPPTPQPIRGVTL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1397	11	88			0.923564
1401			11	88	0.923564
1570	81	18			1.0
1572			81	18	1.0
1575			18	81	1.0
1576		18		81	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain