SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16566

Length: 2166 nt

UniGene Fasta

>sp_v3.0_unigene16566
ATGGGGAACCACGAAGTGGTCTATTTGTACACGCACACACCAACTCCCGCCTACCCACCGAGCAGCCTCCGAAAACATTGTTTACAGTGAAAATGAATAATAAAATGAACCATTACGATCAACCATCACATGTTTGGCTCTCCATCCGTGGCATATACAGTGCCTCAATTAAAATTGGCACCGCACTGAAATTCTGAGAATATTTGGTTACGGAAGGAAAGAGGTCACCAGAAGAGGGATTTAGTTACATTTGGCACACTAACTACGAAATGATGTCTGCAAGCTTTAAGTGCCCAGTATCATTGTCAGGTGTGGAAAATATATGTAACGGGGACAAGGCTATTCCCGGGATCAACTCGAGGACTTTGTTCACAGGGAGTTCATTCTTACAACGACATCATAGTGCCAACAAGATCTTTTTCAGGACGTGTGGAAAAAAGGGGAGCTGTTGCTTGTTCAACATAAGAGCCATGGCTGAGACGGACAGTGGAAATGGTGTACCACAACTTGATATCTCACTGAGTCCAAGGGTGGCAGCCCTTAAACCATCAAAGACAATGGCCATAACAGACCTTGCAACTGCACTTAAGCAAGCTGGAGTTCCTGTTATCGGATTAGCAGCTGGTGAACCTGATTTTAATACACCAGATGCAGTAGCTGAGGCAGGCATTAAGGCAATTCAGGATGGCTATACTCGATATACACCTAATGCAGGAACTATGGAGATTAGAACTGCTATTTGTCATAAGTTAAAAGAGGAAAATGGCCTCTCATATACACCTGACCAGATATTGGTTAGTAACGGAGCAAAACAATGCATCATGCAAGCTGTTTTAGCAGTTTGTTCACCGGGTGATGAGGTTATTATTCCAGCTCCATTTTGGGTAAGCTATACTGAAATGGCTCGGTTAGCAGATGCAACTCCAGTGATAATTCCAACTTTATTATCAGATGATTTTCTATTGAATCCAGAAGTATTTTCTTCAAAGCTGAATGAAAATTCAAGGTTATTGATTCTTTGTTCACCTTCCAACCCAACTGGATCTGTTTATCCAAGAGAATTGCTAGAAGAAATAGCAAAAATTGTTGCAAAGCATCCTAAGTTACTGGTTCTGTCAGATGAAATCTACGAACACATTATGTATCCACCAGCAAAGCACACGAGCTTTGCTTCTTTGCCAGGAATGTGGGAAAGAACACTGACTGTTAATGGATTCTCTAAGGCCTTTGCAATGACAGGTTGGCGACTTGGGTACTTGGCAGGACCAAAGCACTTTGTTACAGCTTGTGGAAGAATTCAGAGCCAGTCCACATCAGGTGCTAGCAGTATCTCTCAGAAAGCAGGGGTTGCTGCTTTGGCCTTGGGATATGCTGGTAGTGAAGCAGTGTCTACTATGGTCAAAGCATACAGGGAGAGGAGAGACTTCTTAGTCCAAAGATTGCAAGCCATGGAGGGTGTTAAATTACCAGTGCCTCAGGGTGCTTTTTATTTATTTCCCGATTTTAGTTCCTACTATGGAACTGAAGTGGAAGATTTTGGTGTTATCAATGGCTCAGAAGCTCTCTGTCGTTTCTTCCTAGAGAAGGCACAAGTTGCTCTTGTCCCAGGAGATGCCTTCGGCAATGATGACTGCATTCGTATTTCATATGCTGCATCCCTTGACACGCTTAGAACAGCCATAAACAATATAGAGAAGTCCTTGTTGCTTCTGCGCCCTGCTGCTGCAGCATCTAAGGCAAGCTAACTACTGAGTAATATTTAGTGATTCTGAAGAGCAATAATGTTTCACATGGAATTATATTCTCACCATATATCTTGAAATGGCCTGAAAGGTGGCCAGACTATATAAAGAACACTGGAAAAAATGTTCAAGTTTAGGTAGAACTTTAGAAGTTGAGTTGAATGTGTCAACCATCTCTAGGTGTTGAAAATTTGCTATTGCTGTTATATGTGTTCATTTTACCAATGTTCGTAGTAAAAGTCAGTTTCTTGTTTCCAGTCAGGACTTGGGATTCTGAGCTCCTGTTTGAGGTGATCGTGTAGGCAAATCTATTTATGTCACTTTTATTGTAAGATAAAAAATTGTTGATTGCTATGACAATTTTCTACAATGATTGATGCAACTTTAGCTTTGATATATAATACACATTAAATATTTCTATTCT

Ace file of the UniGene sp_v3.0_unigene16566

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aspartate aminotransferase n=2 Tax=Pinaceae RepID=PAT_PINPS	-	-	0.0	94%
FL-Next	sp=Aspartate aminotransferase; Pinus pinaster (Maritime pine).	-	-	0.0	99%

Source	ECs	Term	Type	e value	Identity
Sma3	Aspartate transaminase.	EC:2.6.1.1	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250	%
Sma3	Cysteine and methionine metabolism	00270	%
Sma3	Arginine and proline metabolism	00330	%
Sma3	Tyrosine metabolism	00350	%
Sma3	Phenylalanine metabolism	00360	%
Sma3	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	%
Sma3	Carbon fixation in photosynthetic organisms	00710	%
Sma3	Isoquinoline alkaloid biosynthesis	00950	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	aat;

Source	GOs	Term	Type	Identity
Sma3	1-aminocyclopropane-1-carboxylate synthase activity	GO:0016847	Molecular Function	-
Sma3	L-aspartate:2-oxoglutarate aminotransferase activity	GO:0004069	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	1-aminocyclopropane-1-carboxylate synthase	IPR001176	-	-
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G22250.2	ATAAT, AAT, MEE17 aspartate aminotransferase chr2:9458011-9460297 REVERSE LENGTH=475	72%
RefSeq	Arabidopsis thaliana	NP_850022.1	aspartate aminotransferase [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002307109.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q5F4K8

Fln msg:

Fln protein: MMSASFKCPVSLSGVENICNGDKAIPGINSRTLFTGSSFLQRHHSANKIFFRTCGKKGSCCLFNIRAMAETDSGNGVPQLDISLSPRVAALKPSKTMAITDLATALKQAGVPVIGLAAGEPDFNTPDAVAEAGIKAIQDGYTRYTPNAGTMEIRTAICHKLKEENGLSYTPDQILVSNGAKQCIMQAVLAVCSPGDEVIIPAPFWVSYTEMARLADATPVIIPTLLSDDFLLNPEVFSSKLNENSRLLILCSPSNPTGSVYPRELLEEIAKIVAKHPKLLVLSDEIYEHIMYPPAKHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYLAGPKHFVTACGRIQSQSTSGASSISQKAGVAALALGYAGSEAVSTMVKAYRERRDFLVQRLQAMEGVKLPVPQGAFYLFPDFSSYYGTEVEDFGVINGSEALCRFFLEKAQVALVPGDAFGNDDCIRISYAASLDTLRTAINNIEKSLLLLRPAAAASKAS*

Protein Length: 493

Fln nts: ATGGGGAACCACGAAGTGGTCTATTTGTACACGCACACACCAACTCCCGCCTACCCACCGAGCAGCCTCCGAAAACATTGTTTACAGTGAAAATGAATAATAAAATGAACCATTACGATCAACCATCACATGTTTGGCTCTCCATCCGTGGCATATACAGTGCCTCAATTAAAATTGGCACCGCACTGAAATTCTGAGAATATTTGGTTACGGAAGGAAAGAGGTCACCAGAAGAGGGATTTAGTTACATTTGGCACACTAACTACGAA_-_ATGATGTCTGCAAGCTTTAAGTGCCCAGTATCATTGTCAGGTGTGGAAAATATATGTAACGGGGACAAGGCTATTCCCGGGATCAACTCGAGGACTTTGTTCACAGGGAGTTCATTCTTACAACGACATCATAGTGCCAACAAGATCTTTTTCAGGACGTGTGGAAAAAAGGGGAGCTGTTGCTTGTTCAACATAAGAGCCATGGCTGAGACGGACAGTGGAAATGGTGTACCACAACTTGATATCTCACTGAGTCCAAGGGTGGCAGCCCTTAAACCATCAAAGACAATGGCCATAACAGACCTTGCAACTGCACTTAAGCAAGCTGGAGTTCCTGTTATCGGATTAGCAGCTGGTGAACCTGATTTTAATACACCAGATGCAGTAGCTGAGGCAGGCATTAAGGCAATTCAGGATGGCTATACTCGATATACACCTAATGCAGGAACTATGGAGATTAGAACTGCTATTTGTCATAAGTTAAAAGAGGAAAATGGCCTCTCATATACACCTGACCAGATATTGGTTAGTAACGGAGCAAAACAATGCATCATGCAAGCTGTTTTAGCAGTTTGTTCACCGGGTGATGAGGTTATTATTCCAGCTCCATTTTGGGTAAGCTATACTGAAATGGCTCGGTTAGCAGATGCAACTCCAGTGATAATTCCAACTTTATTATCAGATGATTTTCTATTGAATCCAGAAGTATTTTCTTCAAAGCTGAATGAAAATTCAAGGTTATTGATTCTTTGTTCACCTTCCAACCCAACTGGATCTGTTTATCCAAGAGAATTGCTAGAAGAAATAGCAAAAATTGTTGCAAAGCATCCTAAGTTACTGGTTCTGTCAGATGAAATCTACGAACACATTATGTATCCACCAGCAAAGCACACGAGCTTTGCTTCTTTGCCAGGAATGTGGGAAAGAACACTGACTGTTAATGGATTCTCTAAGGCCTTTGCAATGACAGGTTGGCGACTTGGGTACTTGGCAGGACCAAAGCACTTTGTTACAGCTTGTGGAAGAATTCAGAGCCAGTCCACATCAGGTGCTAGCAGTATCTCTCAGAAAGCAGGGGTTGCTGCTTTGGCCTTGGGATATGCTGGTAGTGAAGCAGTGTCTACTATGGTCAAAGCATACAGGGAGAGGAGAGACTTCTTAGTCCAAAGATTGCAAGCCATGGAGGGTGTTAAATTACCAGTGCCTCAGGGTGCTTTTTATTTATTTCCCGATTTTAGTTCCTACTATGGAACTGAAGTGGAAGATTTTGGTGTTATCAATGGCTCAGAAGCTCTCTGTCGTTTCTTCCTAGAGAAGGCACAAGTTGCTCTTGTCCCAGGAGATGCCTTCGGCAATGATGACTGCATTCGTATTTCATATGCTGCATCCCTTGACACGCTTAGAACAGCCATAAACAATATAGAGAAGTCCTTGTTGCTTCTGCGCCCTGCTGCTGCAGCATCTAAGGCAAGCTAA___CTACTGAGTAATATTTAGTGATTCTGAAGAGCAATAATGTTTCACATGGAATTATATTCTCACCATATATCTTGAAATGGCCTGAAAGGTGGCCAGACTATATAAAGAACACTGGAAAAAATGTTCAAGTTTAGGTAGAACTTTAGAAGTTGAGTTGAATGTGTCAACCATCTCTAGGTGTTGAAAATTTGCTATTGCTGTTATATGTGTTCATTTTACCAATGTTCGTAGTAAAAGTCAGTTTCTTGTTTCCAGTCAGGACTTGGGATTCTGAGCTCCTGTTTGAGGTGATCGTGTAGGCAAATCTATTTATGTCACTTTTATTGTAAGATAAAAAATTGTTGATTGCTATGACAATTTTCTACAATGATTGATGCAACTTTAGCTTTGATATATAATACACATTAAATATTTCTATTCT

Fln Alignment:

Contig16566___MMSASFKCPVSLSGVENICNGDKAIPGINSRTLFTGSSFLQRHHSANKIFFRTCGKKGSCCLFNIRAMAETDSGNGVPQLDISLSPRVAALKPSKTMAITDLATALKQAGVPVIGLAAGEPDFNTPDAVAEAGIKAIQDGYTRYTPNAGTMEIRTAICHKLKEENGLSYTPDQILVSNGAKQCIM-QAVLAVCSPGDEVIIPAPFWVSYTEMARLADATPVIIPTLLSDDFLLNPEVFSSKLNENSRLLILCSPSNPTGSVYPRELLEEIAKIVAKHPKLLVLSDEIYEHIMYPPAKHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYLAGPKHFVTACGRIXXXXXXXXXXXXXKXXXXXXXXXXXXSEAVSTMVKAYRERRDFLVQRLQAMEGVKLPVPQGAFYLFPDFSSYYGTEVEDFGVINGSEALCRFFLEKAQVALVPGDAFGNDDCIRISYAASLDTLRTAINNIEK
Q5F4K8_______________MMSASFKCPVSLSGVENICNGDKAIPGINSRTLFTGSSFLQRHHSANKIFFRTCGKKGSCCLFNIRAMAETDSGNGVPQLDISLSPRVAALKPSKTMAITDLATALKQAGVPVIGLAAGEPDFNTPDAVAEAGIKAIQDGYTRYTPNAGTMEIRTAICHKLKEENGLSYTPDQILVSNGAKQCIMAAAVLAVCSPGDEVIIPAPFWVSYTEMARLADATPVIIPTLLSDDFLLNPEVFSSKLNENSRLLILCSPSNPTGSVYPRELLEEIAKIVAKHPKLLVLSDEIYEHIMYPPAKHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYLAGPKHFVTACGRIQSQSTSGASSISQKAGVAALALGYAGSEAVSTMVKAYRERRDFLVQRLQAMEGVKLPVPQGAFYLFPDFSSYYGTEVEDFGVINGSEALCRFFLEKAQVALVPGDAFGNDDCIRISYAASLDTLRTAINNIEK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
2104	13			86	0.999973
2122	18		81		0.999994
2123		90		10	0.90298
2128	14			85	0.993533
2129	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain